project-structure

project-structure is a skill for Claude Code from oborchers/fractional-cto. It costs 97 tokens per session (2,589 once invoked), scanned A, original, MIT.

A guide to organising a Python project’s files, including the `src/` layout, package initialisation files, internal modules, and monorepos. A monorepo is one repository containing multiple related projects or packages.

In plain words
What is it for?
Use it when starting a Python project, choosing between `src/` and a flat layout, creating package directories, or arranging multiple packages in one repository.
Why use it?
It helps avoid projects that work from a checkout but fail after installation because files were not packaged correctly. It also clarifies where importable code and shared packages should live.

Skill for Claude Code

Written for Claude Code: shipped in a Claude Code plugin.

Part of the python-package plugin — 13 skills, 2 commands, 1 agent shipped together

Good fit Use it when starting a Python project, choosing between src/ and a flat layout, creating package directories, or arranging multiple packages in one repository.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/oborchers/fractional-cto/project-structure
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add oborchers/fractional-cto --skill project-structure
Clone the repo
git clone --depth 1 https://github.com/oborchers/fractional-cto

Made for: Claude Code.

Or install python-package, the plugin that ships this one along with the rest of its 13 skills, 2 commands, 1 agent.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for project-structure

README.md
[![agentmods](https://agentmods.dev/badge/skills/oborchers/fractional-cto/project-structure/github.svg)](https://agentmods.dev/skills/oborchers/fractional-cto/project-structure)
Your own site
<a href="https://agentmods.dev/skills/oborchers/fractional-cto/project-structure"><img src="https://agentmods.dev/badge/skills/oborchers/fractional-cto/project-structure/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for project-structure

Your own site · 80×15
<a href="https://agentmods.dev/skills/oborchers/fractional-cto/project-structure"><img src="https://agentmods.dev/badge/skills/oborchers/fractional-cto/project-structure.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 97 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,589 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00097 $0.02589
Opus 5.5 $0.00039 $0.01036
Sonnet 5.5 $0.00019 $0.00518
Haiku 4.5 $0.00010 $0.00259

Measured 3d ago against content hash b6636bf32105, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

project-structure scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 3d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

python-package/skills/project-structure/SKILL.md · 201 lines

How it starts

The opening of the file, as written. The whole thing — 201 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Use the src/ Layout and a Canonical Directory Structure

A broken project structure causes packaging bugs that only surface after publishing. The most common failure: tests pass locally because Python adds the working directory to sys.path, but the installed package is missing files. The src/ layout eliminates this entire class of bugs by design. Every packaging expert -- Hynek Schlawack, the PyPA, the Pallets team -- has converged on this layout. Projects like pytest, pip, Flask, Black, Hatch, and attrs all use it. No major project has ever migrated away from src/ layout.

src/ Layout vs Flat Layout

Place the importable package inside a src/ directory. This forces an editable install (pip install -e . or uv pip install -e .) before tests can import the package, proving that packaging works as part of normal development.

Aspect src/ Layout Flat Layout
Test safety Tests cannot accidentally import from working directory Tests may pass even when packaging is broken
Tool defaults Default for hatch new, uv init --lib, pdm init Default for flit init (historical)
Used by pytest, pip, Flask, Black, Hatch, attrs FastAPI, Pydantic, httpx (predate consensus)
Recommendation Use for all new packages Only for existing projects already using it

Flat layout mitigation (if you must keep it): add --import-mode=importlib to pytest and test against the built wheel in CI.

Canonical Directory Structure

Start every new Python package from this structure:

my-package/                         # Repository root (kebab-case)
    src/
        my_package/                 # Importable package (snake_case)
            __init__.py             # Public API, __all__, version
            py.typed                # PEP 561 marker (empty file)
            core.py                 # Primary public module
            models.py               # Data models
            exceptions.py           # Custom exception hierarchy
            _internal/              # Private implementation
                __init__.py
                _utils.py
                _compat.py          # Python version shims
            cli.py                  # CLI entry point (see cli-architecture skill)
    tests/
        conftest.py                 # Shared fixtures
        test_core.py
        test_models.py
    docs/
        index.md
    pyproject.toml                  # Single configuration file
    README.md
    LICENSE
    CHANGELOG.md
    .gitignore
    .pre-commit-config.yaml

Read the full file on GitHub · 201 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 3d ago First seen · 201 lines · 97 tokens per session scan A b6636bf32105

Subscribe to this mod's changes

project-structure is a skill published in the GitHub repository oborchers/fractional-cto (32 stars, last pushed 3d ago), licensed MIT. It adds 97 tokens to every session and 2,589 once invoked, about $0.0004 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-10-13.

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