Scientific Agent Skills is a collection of reusable procedures that give AI agents capabilities for scientific research across areas such as biology, chemistry, medicine, and drug discovery. It is used by researchers and by people building AI scientist workflows with compatible coding agents. The catalogue contains many of the project's skills and supporting instructions.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add K-Dense-AI/scientific-agent-skills --skill pennylanegit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/pennylane)<a href="https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/pennylane"><img src="https://agentmods.dev/badge/skills/k-dense-ai/scientific-agent-skills/pennylane/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/pennylane"><img src="https://agentmods.dev/badge/skills/k-dense-ai/scientific-agent-skills/pennylane.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- Socket pass
- Snyk pass
- NVIDIA SkillSpector pass
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00098 | $0.02409 |
| Opus 5 | $0.00049 | $0.01205 |
| Sonnet 5 | $0.00020 | $0.00482 |
| Haiku 4.5 | $0.00010 | $0.00241 |
Grade A, and why
pennylane scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
Copies of this mod
7 near-identical copies found in the catalogue:
How it starts
The opening of the file, as written. The whole thing — 257 lines — stays where its author put it; the contents beside it link to each section on GitHub.
PennyLane
Overview
PennyLane is a quantum computing library that enables training quantum computers like neural networks. It provides automatic differentiation of quantum circuits, device-independent programming, and seamless integration with classical machine learning frameworks.
Installation
PennyLane 0.45.0 requires Python 3.11 or newer. Install using uv with pinned versions for reproducible environments:
uv pip install "pennylane==0.45.0"
For quantum hardware access, install the plugin matching the target provider. Start from a clean environment when adding or upgrading Qiskit because its dependency graph is strict.
# IBM Quantum
uv pip install "pennylane-qiskit==0.45.0"
# Amazon Braket
uv pip install "amazon-braket-pennylane-plugin==1.34.1"
# Google Cirq
uv pip install "pennylane-cirq==0.44.0"
# Rigetti Forest
uv pip install "pennylane-rigetti==0.40.0"
# IonQ
uv pip install "pennylane-ionq==0.45.0"
# High-performance local simulators
uv pip install "pennylane-lightning==0.45.0"
# Catalyst JIT compilation
uv pip install "pennylane-catalyst==0.15.0"
Quick Start
Build a quantum circuit and optimize its parameters:
import pennylane as qml
from pennylane import numpy as np
# Create device
dev = qml.device('default.qubit', wires=2)
# Define quantum circuit
@qml.qnode(dev)
def circuit(params):
qml.RX(params[0], wires=0)
qml.RY(params[1], wires=1)
qml.CNOT(wires=[0, 1])
return qml.expval(qml.PauliZ(0))
# Optimize parameters
opt = qml.GradientDescentOptimizer(stepsize=0.1)
params = np.array([0.1, 0.2], requires_grad=True)
for i in range(100):
params = opt.step(circuit, params)
Core Capabilities
1. Quantum Circuit Construction
Build circuits with gates, measurements, and state preparation. See references/quantum_circuits.md for:
- Single and multi-qubit gates
- Controlled operations and conditional logic
- Mid-circuit measurements and adaptive circuits
- Various measurement types (expectation, probability, samples)
- Circuit inspection and debugging
What ships with it
7 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 9d ago First seen · 257 lines · 98 tokens per session scan A 1d24f143290a
pennylane is a skill published in the GitHub repository K-Dense-AI/scientific-agent-skills (44,469 stars, last pushed today), licensed MIT. It adds 98 tokens to every session and 2,409 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
Other skills, from other repositories
biopython
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use…
gh-address-comments
Help address review/issue comments on the open GitHub PR for the current branch using gh CLI; verify gh auth first and prompt the user to authenticate if not logged in.
nanoresearch-experiment
Generate a Python code skeleton from an experiment blueprint.
python-to-dafny-translator
Translate Python programs into equivalent Dafny code, preserving program semantics and ensuring the generated code is well-typed, executable, and verifiable. Use when the user asks to convert Python code to Dafny, port Python programs to Dafny, add formal verification to Python code, or create Dafny versions of Python…
python-to-lean4-translator
Translate Python programs to equivalent Lean4 code while preserving semantics and ensuring type safety. Use when users ask to convert, translate, or port Python code to Lean4, or when they need to verify Python algorithms using Lean4's theorem proving capabilities. Handles functions, classes, data structures, control…
alterlab-anndata
Build, slice, concatenate, read, and write AnnData annotated data matrices (obs, var, X, layers, obsm, uns) — the scverse data STRUCTURE, not an analysis pipeline. Use when creating or wrangling .h5ad/zarr files, managing cell and gene annotations, concatenating batches, or handling layers/obsm/backed-mode; for the…