single-cell-downstream-analysis

single-cell-downstream-analysis is a skill for Claude Code, Codex from omicverse/omicclaw. It costs 41 tokens per session (2,662 once invoked), scanned A, original, GPL-3.0.

A single-cell biology analysis guide for measuring pathway activity, finding gene differences between cell groups, studying drug responses, identifying gene-control networks, and detecting cell communities in OmicVerse.

In plain words
What is it for?
Use it to score pathways, compare metacells, analyze drug response, find regulatory programs, model gene-expression programs, and detect cell communities.
Why use it?
It helps turn single-cell gene measurements into biological findings without having to work out each analysis method and its inputs alone.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Use it to score pathways, compare metacells, analyze drug response, find regulatory programs, model gene-expression programs, and detect cell communities.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/omicverse/omicclaw/single-downstream-analysis
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add omicverse/omicclaw --skill single-downstream-analysis
Clone the repo
git clone --depth 1 https://github.com/omicverse/omicclaw

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for single-cell-downstream-analysis

README.md
[![agentmods](https://agentmods.dev/badge/skills/omicverse/omicclaw/single-downstream-analysis/github.svg)](https://agentmods.dev/skills/omicverse/omicclaw/single-downstream-analysis)
Your own site
<a href="https://agentmods.dev/skills/omicverse/omicclaw/single-downstream-analysis"><img src="https://agentmods.dev/badge/skills/omicverse/omicclaw/single-downstream-analysis/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for single-cell-downstream-analysis

Your own site · 80×15
<a href="https://agentmods.dev/skills/omicverse/omicclaw/single-downstream-analysis"><img src="https://agentmods.dev/badge/skills/omicverse/omicclaw/single-downstream-analysis.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 41 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,662 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00041 $0.02662
Opus 5.5 $0.00016 $0.01065
Sonnet 5.5 $0.00008 $0.00532
Haiku 4.5 $0.00004 $0.00266

Measured 1mo ago against content hash 8f80ae9cfb26, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

single-cell-downstream-analysis scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

src/omicverse_skills/skills/single-downstream-analysis/SKILL.md · 174 lines

The source is not reproduced here

Licensed GPL-3.0

The repository is licensed GPL-3.0, which this catalogue does not treat as permission to reproduce the file. Read it at the source.

Read it on GitHub

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 174 lines · 41 tokens per session scan A 8f80ae9cfb26

Subscribe to this mod's changes

single-cell-downstream-analysis is a skill published in the GitHub repository omicverse/omicclaw (33 stars, last pushed 5mo ago), licensed GPL-3.0. It adds 41 tokens to every session and 2,662 once invoked, about $0.0002 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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