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openpgx: Skill for Cursor

.cursor/openpgx-research-skill/SKILL.md

openpgx-research is a skill for Cursor from open-pgx/openpgx. It costs 171 tokens per session (3,960 once invoked), scanned A, original, no licence file.

A research tool for creating study records about how genetic variants may affect medicine or nutrition. OpenPGx is a catalog of pharmacogenomic and nutrigenomic studies; pharmacogenomics links genes to drug response, while nutrigenomics links genes to nutrition.

In plain words
What is it for?
Use it to research genes or SNPs, create new study JSON files, add genes to the catalog, and process research tasks from TODO-RESEARCH.md.
Why use it?
It helps turn gene or rsID inputs into consistent study data for the OpenPGx database.

Skill for Cursor

Written for Cursor: installed under .cursor/.

This is open-pgx/openpgx's own configuration. It tells Cursor how to work on openpgx itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything openpgx configures →

not rated 12repo 6mo ago A scan 171 tokens no licence
View source ↗ open-pgx/openpgx openpgx.ai
Reuse

Borrowing it

Nothing to install: this file belongs to open-pgx/openpgx. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/open-pgx/openpgx/main/.cursor/openpgx-research-skill/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/open-pgx/openpgx

Made for: Cursor.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for openpgx-research

README.md
[![agentmods](https://agentmods.dev/badge/skills/open-pgx/openpgx/openpgx-research-skill/github.svg)](https://agentmods.dev/skills/open-pgx/openpgx/openpgx-research-skill)
Your own site
<a href="https://agentmods.dev/skills/open-pgx/openpgx/openpgx-research-skill"><img src="https://agentmods.dev/badge/skills/open-pgx/openpgx/openpgx-research-skill/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for openpgx-research

Your own site · 80×15
<a href="https://agentmods.dev/skills/open-pgx/openpgx/openpgx-research-skill"><img src="https://agentmods.dev/badge/skills/open-pgx/openpgx/openpgx-research-skill.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 171 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 3,960 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00171 $0.03960
Opus 5.5 $0.00068 $0.01584
Sonnet 5.5 $0.00034 $0.00792
Haiku 4.5 $0.00017 $0.00396

Measured 2mo ago against content hash 20fd130346b5, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

openpgx-research scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

The scan reads SKILL.md. This mod also ships 1 executable file (scripts/validate_studies.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.cursor/openpgx-research-skill/SKILL.md · 374 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Files

What ships with it

3 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 374 lines · 171 tokens per session scan A 20fd130346b5

Subscribe to this mod's changes

openpgx-research is a skill published in the GitHub repository open-pgx/openpgx (12 stars, last pushed 6mo ago), with no licence file. It adds 171 tokens to every session and 3,960 once invoked, about $0.0007 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

ResearchScientific
Related

openpgx-research compared with skills from other repositories

openpgx-research next to 6 skills from other repositories
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openpgx-researchopen-pgx/openpgxSkill126mo agononeA171Cursor
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research-engineerdavila7/claude-code-templatesSkill33ktodayMITA43Claude Code, Codex
mapping-to-snomedmaziyarpanahi/openmedSkill5.8kyesterdayApache-2.0A205Claude Code