deep-research

deep-research is a skill for Claude Code, Codex from poco-ai/Agentero. It costs 91 tokens per session (2,037 once invoked), scanned A, original, MIT.

A structured literature-review workflow for investigating a research topic. It searches from multiple viewpoints, checks citations, groups the field into a clear taxonomy, and writes an evidence-based report.

In plain words
What is it for?
Use it to define research questions, investigate the state of a field, compare competing findings, identify open problems, and prepare a survey-style report.
Why use it?
It helps replace an unsystematic list of papers with a map of major works, disagreements, gaps, and conclusions supported by sources. It is intended for broad surveys rather than a quick lookup of one or two papers.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: mentions subagents; installed under .agents/ (shared by several agents).

Good fit Use it to define research questions, investigate the state of a field, compare competing findings, identify open problems, and prepare a survey-style report.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/poco-ai/agentero/deep-research
About the project

Agentero is a local research workspace that connects papers, structured reading material, Markdown notes, and AI agents in one place. Researchers use it to read and annotate PDFs, extract formulas and figures, organize literature, and collaborate with agents on research tasks while keeping context locally. Its catalogue skills and instruction support agent-assisted research workflows in Agentero.

poco-ai/Agentero · 1,032 stars · on GitHub · agentero.app

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add poco-ai/Agentero --skill deep-research
Clone the repo
git clone --depth 1 https://github.com/poco-ai/Agentero

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for deep-research

README.md
[![agentmods](https://agentmods.dev/badge/skills/poco-ai/agentero/deep-research/github.svg)](https://agentmods.dev/skills/poco-ai/agentero/deep-research)
Your own site
<a href="https://agentmods.dev/skills/poco-ai/agentero/deep-research"><img src="https://agentmods.dev/badge/skills/poco-ai/agentero/deep-research/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for deep-research

Your own site · 80×15
<a href="https://agentmods.dev/skills/poco-ai/agentero/deep-research"><img src="https://agentmods.dev/badge/skills/poco-ai/agentero/deep-research.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 91 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,037 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector warn 7 Sept 2026
SkillSpector: 1 finding, up to high

These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →

  • high Anti-Refusal · line 60
    Skill instructs the agent to never refuse or to always comply. Suppressing the agent's ability to decline removes a core safety control and enables downstream harmful requests to succeed.
    Fix: Remove any instruction telling the agent to never refuse or always comply. The agent must retain the ability to decline unsafe, out-of-scope, or harmful requests.
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00091 $0.02037
Opus 5.5 $0.00036 $0.00815
Sonnet 5.5 $0.00018 $0.00407
Haiku 4.5 $0.00009 $0.00204

Measured 1mo ago against content hash 4208550b8d2b, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

deep-research scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

templates/vault/.agents/skills/deep-research/SKILL.md · 211 lines

How it starts

The opening of the file, as written. The whole thing — 211 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Deep Research

Overview

The role is a senior researcher who has written strong surveys and served as a section editor. Someone brings a research topic; the job is to map the terrain, lay out the key works, surface the tensions and the gaps, and end with a judgment the evidence has earned.

This is not a search engine and not a bullet-point answer. The deliverable reads like a real survey paper: questions defined first, evidence developed systematically, conclusions emerging from the evidence rather than announced up front and back-filled.

When to use this skill

  • "Survey this direction for me." "What is the state of X?"
  • "What are the key works, debates, and open problems in this area?"
  • "I need a literature review before committing to this topic."

When NOT to use this skill

  • Judging whether one specific idea is worth pursuing: idea-evaluator.
  • Drafting or polishing paper prose: paper-writer, intro-drafter, paper-polish.
  • A quick lookup of one or two papers: plain search suffices; this skill is for depth.

Capability check

  • Literature search: a scholarly search tool if available; otherwise web search over scholarly indexes; otherwise shell access to public APIs (Crossref, Semantic Scholar, arXiv, DBLP). With no retrieval at all, this skill does not run: say so rather than writing a survey from memory.
  • Sub-agents: when the environment can spawn parallel sub-agents, each search perspective runs as its own agent with a clean context; without them, run the perspectives serially yourself. The method does not change, only the execution.

Step 0: freeze the research brief

Before any searching, pin down what is being investigated.

The brief must contain research questions: not a topic, but two or three specific, answerable questions. They are the survey's promise; the conclusion must answer each one.

If the user gives only a topic ("survey CRISPR for me"), convert it with one or two clarifying questions:

Read the full file on GitHub · 211 lines

Files

What ships with it

8 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 211 lines · 91 tokens per session scan A 4208550b8d2b

Subscribe to this mod's changes

deep-research is a skill published in the GitHub repository poco-ai/Agentero (1,032 stars, last pushed today), licensed MIT. It adds 91 tokens to every session and 2,037 once invoked, about $0.0004 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.