vault-normalizer

vault-normalizer is a skill for Claude Code, Codex from poco-ai/Agentero. It costs 57 tokens per session (2,187 once invoked), scanned A, original, MIT.

A file-organization workflow that converts an existing research directory into an Agentero vault, a structured folder for papers, notes, sources, and related files.

In plain words
What is it for?
Use it to plan and carry out a safe research-folder migration, including papers, PDFs, TeX sources, annotations, attachments, and catalogue metadata.
Why use it?
It provides a consistent layout while protecting original research files, notes, links, and the catalogue database.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: installed under .agents/ (shared by several agents); mentions AGENTS.md.

Good fit Use it to plan and carry out a safe research-folder migration, including papers, PDFs, TeX sources, annotations, attachments, and catalogue metadata.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/poco-ai/agentero/vault-normalizer
About the project

Agentero is a local research workspace that connects papers, structured reading material, Markdown notes, and AI agents in one place. Researchers use it to read and annotate PDFs, extract formulas and figures, organize literature, and collaborate with agents on research tasks while keeping context locally. Its catalogue skills and instruction support agent-assisted research workflows in Agentero.

poco-ai/Agentero · 1,032 stars · on GitHub · agentero.app

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add poco-ai/Agentero --skill vault-normalizer
Clone the repo
git clone --depth 1 https://github.com/poco-ai/Agentero

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for vault-normalizer

README.md
[![agentmods](https://agentmods.dev/badge/skills/poco-ai/agentero/vault-normalizer/github.svg)](https://agentmods.dev/skills/poco-ai/agentero/vault-normalizer)
Your own site
<a href="https://agentmods.dev/skills/poco-ai/agentero/vault-normalizer"><img src="https://agentmods.dev/badge/skills/poco-ai/agentero/vault-normalizer/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for vault-normalizer

Your own site · 80×15
<a href="https://agentmods.dev/skills/poco-ai/agentero/vault-normalizer"><img src="https://agentmods.dev/badge/skills/poco-ai/agentero/vault-normalizer.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 57 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,187 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector warn 7 Sept 2026
SkillSpector: 1 finding, up to medium

These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →

  • medium Excessive Agency · line 22
    Skill enables autonomous high-impact decisions without human-in-the-loop verification. Critical operations (destructive commands, financial transactions, data deletion) should require explicit user confirmation.
    Fix: Add human-in-the-loop confirmation for destructive, irreversible, or high-impact operations. Never auto-execute commands that modify files, send data, or alter system state.
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00057 $0.02187
Opus 5.5 $0.00023 $0.00875
Sonnet 5.5 $0.00011 $0.00437
Haiku 4.5 $0.00006 $0.00219

Measured 1mo ago against content hash 7d4c10bd6e95, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

vault-normalizer scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

templates/vault/.agents/skills/vault-normalizer/SKILL.md · 154 lines

How it starts

The opening of the file, as written. The whole thing — 154 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Vault Normalizer

Goal

Convert an existing research directory into an Agentero-compatible Vault without losing user-written notes or original files.

Safety rules

  • Inspect first; do not move, rename, delete, or overwrite files until the user approves a concrete migration plan.
  • Preserve user-written Markdown, PDFs, TeX/source archives, annotations, Obsidian [[wikilinks]], and any existing AGENTS.md content.
  • If a directory already has AGENTS.md, read it as local instructions and do not replace it; only propose an append/merge draft when the user asks.
  • Prefer copying or staged moves when the source directory is not already a Vault.
  • Never treat .agentero/catalog.sqlite as disposable cache; it is the authoritative paper collection and metadata store.
  • Do not make root PAPERS.md, library.bib, or per-paper metadata.json the source of truth. They are optional exports or projections.
  • Treat link repair as a separate, reviewable change. Do not invent missing notes, select an ambiguous candidate, or rewrite a user-authored link without approval.

Target layout

agentero-vault/
├── AGENTS.md
├── papers/
│   ├── <paper-id-or-citekey>/
│   │   ├── NOTES.md
│   │   ├── <id>.pdf
│   │   ├── PAPER.md        # optional derived readable body
│   │   ├── marks/          # optional JSON highlights / asks / translations
│   │   ├── source/         # optional original TeX / e-print
│   │   ├── assets/         # optional note images or derived figures
│   │   └── attachments/    # optional extras: supplement PDFs, slides, code repos
│   └── <topic>/.../<paper-id-or-citekey>/
├── notes/
├── plans/
├── assets/                 # optional non-paper media
├── .agents/
│   └── skills/
└── .agentero/
    ├── catalog.sqlite
    ├── config.json
    └── .trash/

Directory rules

  • papers/ contains all cataloged papers. Topic folders are allowed at any depth.
  • A paper folder is the smallest paper unit and is recognized by direct children such as NOTES.md, PAPER.md, marks/, source/, assets/, or transitional metadata.json.
  • A topic folder under papers/ is not a paper unless it directly contains a paper marker.
  • Catalog identity is the Vault-relative paper folder path, e.g. papers/nlp/transformers/1706.03762, not just the leaf directory name.
  • Local PDFs for a paper should live at the paper folder root, not inside source/. Extra PDFs (supplement, slides, reviews) belong in {paper}/attachments/, not the paper root.
  • TeX, arXiv e-print contents, and original source archives belong in {paper}/source/. Do not put user extras there.
  • Supporting materials (code repos, datasets, extra PDFs) belong in {paper}/attachments/. Create that directory only when adding files; do not create empty attachments/ folders. attachments/ is not a paper-identity marker.
  • User notes about one paper belong in {paper}/NOTES.md.
  • For new organization, prefer notes/ for concept notes and cross-paper notes, and plans/ for research plans, TODOs, and drafts; do not force-move existing folders that already work for the user.
  • Markdown-embedded images belong beside the Markdown file in ./assets/ and should use relative links like ![alt](./assets/file.png).
  • PDF selection artifacts belong in {paper}/marks/*.json; do not write them into the PDF binary or catalog body.
  • .agentero/ is application state and should not be shown or edited as ordinary notes.

Read the full file on GitHub · 154 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago Changed 7d4c10bd6e95
  2. 1mo ago First seen · 154 lines · 57 tokens per session scan A e3f15d275998

Subscribe to this mod's changes

vault-normalizer is a skill published in the GitHub repository poco-ai/Agentero (1,032 stars, last pushed today), licensed MIT. It adds 57 tokens to every session and 2,187 once invoked, about $0.0002 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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