matgl-framework

matgl-framework is a skill for Claude Code, Codex from SFETNI/Deep-Matter-Chem-Skills. It costs 3 tokens per session (3,440 once invoked), scanned A, original, MIT.

A guide for MatGL, a machine-learning framework that predicts material properties from crystal structures. It uses graph-based models and works with pymatgen, a Python library for representing materials structures.

In plain words
What is it for?
It is for using pretrained models, building graph representations of periodic crystals, predicting properties, preparing structure relaxations, and fine-tuning models on materials data.
Why use it?
It helps choose and validate learned predictions instead of treating them as guaranteed replacements for quantum-mechanical calculations.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit It is for using pretrained models, building graph representations of periodic crystals, predicting properties, preparing structure relaxations, and fine-tuning models on materials data.

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Install with agentmods
npx agentmods add skills/sfetni/deep-matter-chem-skills/matgl-framework
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add SFETNI/Deep-Matter-Chem-Skills --skill matgl-framework
Clone the repo
git clone --depth 1 https://github.com/SFETNI/Deep-Matter-Chem-Skills

Made for: Claude Code, Codex.

Wrote this? Show the measurements

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README.md
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Per session 3 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 3,440 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00003 $0.03440
Opus 5 $0.00002 $0.01720
Sonnet 5 $0.00001 $0.00688
Haiku 4.5 $0.00000 $0.00344

Measured 11d ago against content hash a3758cc91063, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

matgl-framework scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/geometric-deep-learning/matgl-framework/SKILL.md · 274 lines

How it starts

The opening of the file, as written. The whole thing — 274 lines — stays where its author put it; the contents beside it link to each section on GitHub.

MatGL Framework

Description

Use this skill when building, applying, validating, or fine-tuning MatGL models for materials property prediction, learned interatomic potentials, and graph-based materials workflows. MatGL is most useful when a workflow needs pretrained graph neural network models, pymatgen-compatible structure handling, periodic crystal graph construction, or a bridge between materials databases, DFT datasets, and learned potential deployment.

MatGL should not be treated as a black-box replacement for DFT. Pretrained models can be extremely useful for screening, relaxation preconditioning, or baseline predictions, but their reliability depends on the training domain, target definition, element coverage, structure type, and validation protocol.

Domain Context

MatGL sits in the materials graph-learning ecosystem alongside M3GNet-style universal potentials, MEGNet-style property models, CHGNet-style charge-informed workflows, and newer pretrained materials models. In practice, it often appears in workflows that start from pymatgen Structure objects, convert periodic structures into graph representations, apply a pretrained model, and then validate predictions against DFT or experiment.

Useful MatGL tasks include:

  • Predicting crystal properties from periodic structures.
  • Loading pretrained models for formation energy, band gap, or potential-energy-surface inference where available.
  • Relaxing structures using learned energy/force/stress models.
  • Fine-tuning pretrained models on project-specific DFT datasets.
  • Preparing graph-learning baselines for high-throughput screening.
  • Comparing universal-potential relaxations against VASP, Quantum ESPRESSO, or CP2K reference calculations.

When to Use This Skill

  • Use when applying MatGL pretrained models to crystal property prediction, screening, relaxation preconditioning, or potential-energy-surface inference.
  • Use when converting pymatgen structures into periodic graph-learning inputs with explicit control over cell representation, cutoffs, neighbor lists, and metadata.
  • Use when fine-tuning MatGL or M3GNet-style models on project-specific DFT datasets with energy, force, stress, or scalar property labels.
  • Use when comparing MatGL predictions against DFT, high-throughput DFT, universal potentials, or other graph neural network baselines.

Read the full file on GitHub · 274 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 11d ago First seen · 274 lines · 3 tokens per session scan A a3758cc91063

Subscribe to this mod's changes

matgl-framework is a skill published in the GitHub repository SFETNI/Deep-Matter-Chem-Skills (6 stars, last pushed 1mo ago), licensed MIT. It adds 3 tokens to every session and 3,440 once invoked, about $0.0000 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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