nequip-training

nequip-training is a skill for Claude Code, Codex from SFETNI/Deep-Matter-Chem-Skills. It costs 3 tokens per session (4,493 once invoked), scanned A, original, MIT.

A workflow for training, checking, and deploying NequIP-style neural-network models that predict interactions between atoms from DFT reference data. NequIP models are used to approximate quantum-mechanical calculations for materials and molecules.

In plain words
What is it for?
Use it to build system-specific potentials, compare NequIP with other atomistic models, decide between fine-tuning and training from scratch, and prepare models for molecular dynamics.
Why use it?
It helps choose a training approach, investigate unstable simulations, and judge models beyond their validation error.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to build system-specific potentials, compare NequIP with other atomistic models, decide between fine-tuning and training from scratch, and prepare models for molecular dynamics.

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Install with agentmods
npx agentmods add skills/sfetni/deep-matter-chem-skills/nequip-training
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add SFETNI/Deep-Matter-Chem-Skills --skill nequip-training
Clone the repo
git clone --depth 1 https://github.com/SFETNI/Deep-Matter-Chem-Skills

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for nequip-training

README.md
[![agentmods](https://agentmods.dev/badge/skills/sfetni/deep-matter-chem-skills/nequip-training/github.svg)](https://agentmods.dev/skills/sfetni/deep-matter-chem-skills/nequip-training)
Your own site
<a href="https://agentmods.dev/skills/sfetni/deep-matter-chem-skills/nequip-training"><img src="https://agentmods.dev/badge/skills/sfetni/deep-matter-chem-skills/nequip-training/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for nequip-training

Your own site · 80×15
<a href="https://agentmods.dev/skills/sfetni/deep-matter-chem-skills/nequip-training"><img src="https://agentmods.dev/badge/skills/sfetni/deep-matter-chem-skills/nequip-training.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 3 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 4,493 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00003 $0.04493
Opus 5 $0.00002 $0.02246
Sonnet 5 $0.00001 $0.00899
Haiku 4.5 $0.00000 $0.00449

Measured 12d ago against content hash 156ea9b90267, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

nequip-training scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/ml-interatomic-potentials/nequip-training/SKILL.md · 302 lines

How it starts

The opening of the file, as written. The whole thing — 302 lines — stays where its author put it; the contents beside it link to each section on GitHub.

NequIP Training

Description

This skill covers training, validating, and deploying NequIP-style E(3)-equivariant neural network interatomic potentials from DFT reference data. Invoke it when building a system-specific equivariant potential, comparing NequIP against MACE, DeePMD, CHGNet, M3GNet, or universal potentials, diagnosing unstable MD despite low validation errors, or deciding whether to fine-tune an existing model versus training from scratch.

Domain Context

NequIP is a local, E(3)-equivariant graph neural network potential. It represents atoms as nodes, neighbor pairs within a finite cutoff as edges, and internal features as irreducible representations (irreps) of the rotation group. The total energy is invariant to translation, rotation, and atom indexing; forces transform equivariantly because they are gradients of the energy with respect to positions.

The main physical approximation is locality: each atomic energy contribution depends on the environment within a cutoff radius and a finite number of message-passing layers. This is appropriate for many condensed-phase, molecular, and materials systems when the DFT training set covers the relevant local environments. It is incomplete for long-range electrostatics, charged defects, polar surfaces, dispersion-dominated systems, and electronic phenomena that are not encoded in the structure or training labels unless the workflow includes special treatment. [EXPERT REVIEW NEEDED]

Equivariance gives NequIP strong data efficiency because the model does not need to learn rotational symmetry from augmented data. This is especially useful for small to medium system-specific datasets with accurate forces. Data efficiency does not remove the need for broad configuration coverage: a model trained only on near-equilibrium structures can still fail catastrophically in MD, surfaces, defects, high-temperature events, or compression/expansion regimes.

NequIP is usually trained on DFT energies and forces, and sometimes stress/virial information where the software version and deployment path support it. Stress support, LAMMPS deployment, Allegro integration, and configuration keys are version-dependent. Mark every production workflow with the exact NequIP, e3nn, PyTorch, ASE, CUDA, and deployment plugin versions. [EXPERT REVIEW NEEDED]

Read the full file on GitHub · 302 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 302 lines · 3 tokens per session scan A 156ea9b90267

Subscribe to this mod's changes

nequip-training is a skill published in the GitHub repository SFETNI/Deep-Matter-Chem-Skills (6 stars, last pushed 1mo ago), licensed MIT. It adds 3 tokens to every session and 4,493 once invoked, about $0.0000 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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