AutoSci: Skill for Claude Code

.claude/skills/ideate/SKILL.md

ideate is a skill for Claude Code from skyllwt/AutoSci. It costs 0 tokens per session (7,420 once invoked), scanned A, original, MIT.

A five-phase pipeline for generating and testing research ideas. It scans existing knowledge and current research, creates ideas with two models, checks them, records them in a wiki, and can run pilot experiments.

In plain words
What is it for?
Use it to explore a research direction, generate and filter ideas, assess feasibility and novelty, write surviving ideas to wiki pages, and optionally run pilots.
Why use it?
It organizes research discovery and keeps rejected ideas with their reasons, reducing repeated work and making the process traceable.

Skill for Claude Code

Written for Claude Code: argument-hint in frontmatter. Also seen: reads .claude/ paths; mentions Claude Code.

This is skyllwt/AutoSci's own configuration. It tells Claude Code how to work on AutoSci itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything AutoSci configures →

Needs its repository: it runs a file that does not travel with it, so clone the repository first. The line is python3 tools/research_wiki.py maturity wiki/ --json.

About the project

AutoSci is an AI research platform organized around a wiki, with an agent that supports stages of scientific work such as reading, experimentation, writing, and retaining knowledge across projects. It is for people building or using AI-assisted research workflows, with Claude Code, Codex, and OpenCode adaptations available. The catalogue add-ons extend those agent-specific workflows.

skyllwt/AutoSci · 1,706 stars · on GitHub

Reuse

Borrowing it

Nothing to install: this file belongs to skyllwt/AutoSci. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/skyllwt/AutoSci/main/.claude/skills/ideate/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/skyllwt/AutoSci

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for ideate

README.md
[![agentmods](https://agentmods.dev/badge/skills/skyllwt/autosci/ideate/github.svg)](https://agentmods.dev/skills/skyllwt/autosci/ideate)
Your own site
<a href="https://agentmods.dev/skills/skyllwt/autosci/ideate"><img src="https://agentmods.dev/badge/skills/skyllwt/autosci/ideate/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for ideate

Your own site · 80×15
<a href="https://agentmods.dev/skills/skyllwt/autosci/ideate"><img src="https://agentmods.dev/badge/skills/skyllwt/autosci/ideate.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 0 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 7,420 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector warn 7 Sept 2026
SkillSpector: 10 findings, up to high

These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →

  • high Tool Misuse · line 3
    Tool parameters are crafted to achieve unintended or unsafe behavior. Parameter abuse can bypass intended safety checks (e.g. shell=True, --force, dangerous glob patterns).
    Fix: Validate all tool parameters against an allowlist. Reject dangerous parameter values (shell=True, --force, -rf /) and use safe defaults.
  • high Tool Misuse · line 17
    Tool parameters are crafted to achieve unintended or unsafe behavior. Parameter abuse can bypass intended safety checks (e.g. shell=True, --force, dangerous glob patterns).
    Fix: Validate all tool parameters against an allowlist. Reject dangerous parameter values (shell=True, --force, -rf /) and use safe defaults.
  • high Tool Misuse · line 216
    Tool parameters are crafted to achieve unintended or unsafe behavior. Parameter abuse can bypass intended safety checks (e.g. shell=True, --force, dangerous glob patterns).
    Fix: Validate all tool parameters against an allowlist. Reject dangerous parameter values (shell=True, --force, -rf /) and use safe defaults.
  • high Tool Misuse · line 218
    Tool parameters are crafted to achieve unintended or unsafe behavior. Parameter abuse can bypass intended safety checks (e.g. shell=True, --force, dangerous glob patterns).
    Fix: Validate all tool parameters against an allowlist. Reject dangerous parameter values (shell=True, --force, -rf /) and use safe defaults.
  • high Tool Misuse · line 278
    Tool parameters are crafted to achieve unintended or unsafe behavior. Parameter abuse can bypass intended safety checks (e.g. shell=True, --force, dangerous glob patterns).
    Fix: Validate all tool parameters against an allowlist. Reject dangerous parameter values (shell=True, --force, -rf /) and use safe defaults.
  • medium Tool Misuse · line 3
    Tool defaults are unsafe or overly permissive (e.g. disabled TLS verification, no authentication, world-writable permissions). Unsafe defaults widen the attack surface.
    Fix: Override unsafe defaults with secure settings (verify=True, auth required, restrictive permissions). Review and harden all tool configurations.
  • medium Tool Misuse · line 17
    Tool defaults are unsafe or overly permissive (e.g. disabled TLS verification, no authentication, world-writable permissions). Unsafe defaults widen the attack surface.
    Fix: Override unsafe defaults with secure settings (verify=True, auth required, restrictive permissions). Review and harden all tool configurations.
  • medium Tool Misuse · line 216
    Tool defaults are unsafe or overly permissive (e.g. disabled TLS verification, no authentication, world-writable permissions). Unsafe defaults widen the attack surface.
    Fix: Override unsafe defaults with secure settings (verify=True, auth required, restrictive permissions). Review and harden all tool configurations.
  • medium Tool Misuse · line 218
    Tool defaults are unsafe or overly permissive (e.g. disabled TLS verification, no authentication, world-writable permissions). Unsafe defaults widen the attack surface.
    Fix: Override unsafe defaults with secure settings (verify=True, auth required, restrictive permissions). Review and harden all tool configurations.
  • medium Tool Misuse · line 278
    Tool defaults are unsafe or overly permissive (e.g. disabled TLS verification, no authentication, world-writable permissions). Unsafe defaults widen the attack surface.
    Fix: Override unsafe defaults with secure settings (verify=True, auth required, restrictive permissions). Review and harden all tool configurations.
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00000 $0.07420
Opus 5.5 $0.00000 $0.02968
Sonnet 5.5 $0.00000 $0.01484
Haiku 4.5 $0.00000 $0.00742

Measured 2mo ago against content hash 9fb2d36c0048, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

ideate scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/skills/ideate/SKILL.md · 557 lines

How it starts

The opening of the file, as written. The whole thing — 557 lines — stays where its author put it; the contents beside it link to each section on GitHub.

/ideate

Generates high-quality research ideas through a 5-phase pipeline, grounded in the wiki knowledge base and external search. Phase 1 scans the research landscape (wiki + WebSearch + S2), Phase 2 runs a dual-model brainstorm (Claude + Review LLM independently), Phase 3 applies first-pass filter + deep validation (feasibility, novelty, review), Phase 4 writes ideas to the wiki (including eliminated ideas, with failure reasons recorded as anti-repetition memory), Phase 5 runs pilot experiments on surviving ideas (idea pages already exist) and updates results.

Inputs

  • direction (optional): research direction, keywords, or specific problem description. If omitted, automatically selects the most valuable direction from open_questions.md.
  • --max-ideas N (optional, default 3): maximum number of ideas to write to the wiki
  • --skip-validation: skip Phase 3 Step 2 deep validation (skip /novelty and /review; fast mode: first-pass filter only)
  • --skip-pilot: skip Phase 5 pilot experiments (fast mode: Phase 1–4 only)
  • --auto: fully automatic mode, no pause for user confirmation (used when called by /research)

Outputs

  • wiki/ideas/{slug}.md — one page per idea (status: proposed), covering both top ideas and eliminated ideas
  • wiki/graph/edges.jsonl — new idea → concept/topic relationship edges
  • wiki/graph/context_brief.md — rebuilt compressed context
  • wiki/graph/open_questions.md — rebuilt knowledge gap map
  • IDEA_REPORT (printed to terminal) — pipeline execution summary, ranked results, novelty scores

Wiki Interaction

Reads

  • wiki/graph/context_brief.md — global context
  • wiki/graph/open_questions.md — knowledge gaps, drives idea direction
  • wiki/ideas/*.md — existing ideas, especially status=failed ideas and their failure_reason (banlist)
  • wiki/papers/*.md — existing paper methods and results
  • wiki/concepts/*.md — technical concepts, find cross-domain combination opportunities
  • wiki/methods/*.md — reusable methods, scope candidate inspirations
  • wiki/topics/*.md — research direction maps, SOTA and open problems (including ### Known gaps and ### Methodological gaps)
  • wiki/experiments/*.md — existing experiment results, avoid duplication

Read the full file on GitHub · 557 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 557 lines · 0 tokens per session scan A 9fb2d36c0048

Subscribe to this mod's changes

ideate is a skill published in the GitHub repository skyllwt/AutoSci (1,706 stars, last pushed 1mo ago), licensed MIT. It costs nothing until one of its globs matches a file; then it loads 7,420 tokens. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

ideate compared with skills from other repositories

ideate next to 6 skills from other repositories
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