AutoSci: Skill for Claude Code

.claude/skills/setup/SKILL.md

setup is a skill for Claude Code from skyllwt/AutoSci. It costs 27 tokens per session (2,384 once invoked), scanned B, original, MIT.

An interactive setup guide for configuring optional API keys for Semantic Scholar, DeepXiv, and Review LLM.

In plain words
What is it for?
Use it to inspect and update the project's .env configuration for supported research and review services.
Why use it?
It shows which services are already configured and explains what each missing key is used for before changing the environment settings.

Skill for Claude Code

Written for Claude Code: installed under .claude/. Also seen: mentions Claude Code.

This is skyllwt/AutoSci's own configuration. It tells Claude Code how to work on AutoSci itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything AutoSci configures →

About the project

AutoSci is an AI research platform organized around a wiki, with an agent that supports stages of scientific work such as reading, experimentation, writing, and retaining knowledge across projects. It is for people building or using AI-assisted research workflows, with Claude Code, Codex, and OpenCode adaptations available. The catalogue add-ons extend those agent-specific workflows.

skyllwt/AutoSci · 1,706 stars · on GitHub

Reuse

Borrowing it

Nothing to install: this file belongs to skyllwt/AutoSci. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/skyllwt/AutoSci/main/.claude/skills/setup/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/skyllwt/AutoSci

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for setup

README.md
[![agentmods](https://agentmods.dev/badge/skills/skyllwt/autosci/setup/github.svg)](https://agentmods.dev/skills/skyllwt/autosci/setup)
Your own site
<a href="https://agentmods.dev/skills/skyllwt/autosci/setup"><img src="https://agentmods.dev/badge/skills/skyllwt/autosci/setup/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for setup

Your own site · 80×15
<a href="https://agentmods.dev/skills/skyllwt/autosci/setup"><img src="https://agentmods.dev/badge/skills/skyllwt/autosci/setup.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 27 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,384 The whole file, excluding the scripts and references it only reads on demand.
Security scan B 2 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector warn 7 Sept 2026
SkillSpector: 9 findings, up to high

These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →

  • high Privilege Escalation · line 2
    Code accesses credential files (SSH keys, AWS credentials, etc.). This could indicate credential theft attempts.
    Fix: Remove references to credential paths. Use environment variables or secrets managers. For docs, use placeholder paths (e.g., /path/to/config). Never load .env or token files in production code paths.
  • high Privilege Escalation · line 257
    Code accesses credential files (SSH keys, AWS credentials, etc.). This could indicate credential theft attempts.
    Fix: Remove references to credential paths. Use environment variables or secrets managers. For docs, use placeholder paths (e.g., /path/to/config). Never load .env or token files in production code paths.
  • medium analysis-evasion · line 1
    Suspicious Unicode normalization or mixed-script content
    Fix: Review the flagged content for security risks. Ensure no credentials, secrets, or sensitive data are exposed.
  • medium Rogue Agent · line 105
    Skill establishes unauthorized persistence across sessions via cron jobs, startup scripts, or state files. Session persistence allows an attacker to maintain access beyond the current interaction.
    Fix: Remove any persistence mechanisms (cron jobs, startup scripts, state files). Skills should not maintain state across sessions without explicit user consent.
  • medium Data Exfiltration · line 144
    Data is being sent to an external URL. This could be legitimate telemetry or data exfiltration. Manual review is recommended.
    Fix: Verify the destination URL is trusted and necessary. Remove or replace with documented APIs. Ensure no secrets, tokens, or PII are transmitted.
  • medium Data Exfiltration · line 144
    Data is being sent to an external URL. This could be legitimate telemetry or data exfiltration. Manual review is recommended.
    Fix: Verify the destination URL is trusted and necessary. Remove or replace with documented APIs. Ensure no secrets, tokens, or PII are transmitted.
  • medium Data Exfiltration · line 144
    Data is being sent to an external URL. This could be legitimate telemetry or data exfiltration. Manual review is recommended.
    Fix: Verify the destination URL is trusted and necessary. Remove or replace with documented APIs. Ensure no secrets, tokens, or PII are transmitted.
  • medium Data Exfiltration · line 186
    Data is being sent to an external URL. This could be legitimate telemetry or data exfiltration. Manual review is recommended.
    Fix: Verify the destination URL is trusted and necessary. Remove or replace with documented APIs. Ensure no secrets, tokens, or PII are transmitted.
  • medium Excessive Agency · line 247
    Skill enables autonomous high-impact decisions without human-in-the-loop verification. Critical operations (destructive commands, financial transactions, data deletion) should require explicit user confirmation.
    Fix: Add human-in-the-loop confirmation for destructive, irreversible, or high-impact operations. Never auto-execute commands that modify files, send data, or alter system state.
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00027 $0.02384
Opus 5.5 $0.00011 $0.00954
Sonnet 5.5 $0.00005 $0.00477
Haiku 4.5 $0.00003 $0.00238

Measured 2mo ago against content hash daa9b2c14798, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade B, and why

setup scanned grade B with 2 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Sends data to an external URLmediumData exfiltration

A POST to an outside endpoint may be telemetry or may be exfiltration; either way the mod talks to somewhere, and you should know where.

resp = requests.post('https://data.rag.ac.cn/api/register/sdk', json=payload, timeout=30)

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

resp = requests.post('https://data.rag.ac.cn/api/register/sdk', json=payload, timeout=30)
.claude/skills/setup/SKILL.md · 283 lines

How it starts

The opening of the file, as written. The whole thing — 283 lines — stays where its author put it; the contents beside it link to each section on GitHub.

/setup

Guides you through ΩmegaWiki's optional API key configuration. Reads your current .env, shows what is and isn't configured, and helps you set up each key with clear explanations of what it does and how to get it. Safe to re-run at any time — only updates keys you choose to configure.

Inputs

  • No arguments required
  • Reads: .env (current configuration state)
  • Reads: config/setup-guide.md (reference for what each key does)

Outputs

  • Updated .env with any newly configured keys
  • A summary of current configuration status

Wiki Interaction

Reads

  • None (setup runs before any wiki exists)

Writes

  • None (does not touch the wiki)

Workflow

Step 1: Read Configuration Reference

Read config/setup-guide.md to load the complete reference for all configurable keys, including what each does, which skills use it, how to get it, and fallback behavior.

Step 2: Detect Current Environment

Run the following to check what is already configured:

python3 -c "
import sys, os
sys.path.insert(0, 'tools')
try:
    import _env
except Exception:
    pass
keys = {
    'SEMANTIC_SCHOLAR_API_KEY': 'Semantic Scholar',
    'DEEPXIV_TOKEN':            'DeepXiv',
    'LLM_API_KEY':              'Review LLM (API key)',
    'LLM_BASE_URL':             'Review LLM (base URL)',
    'LLM_MODEL':                'Review LLM (model)',
}
for k, label in keys.items():
    v = os.environ.get(k, '').strip()
    print(f'SET:{k}' if v else f'UNSET:{k}')
"

Also detect the Python environment and .venv status:

ls .venv/ 2>/dev/null && echo "venv:present" || echo "venv:absent"
python3 --version

Step 3: Show Configuration Status

Present a clear summary to the user, grouped by status:

ΩmegaWiki Configuration Status
================================
✓  ANTHROPIC_API_KEY      — managed by Claude Code (claude login)

Recommended:
✗  Semantic Scholar        — not set  (citation expansion 3x slower — get free key)

Optional:
✗  DeepXiv                 — not set  (semantic search unavailable)
✗  Review LLM              — not set  (cross-model review unavailable)

Read the full file on GitHub · 283 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 283 lines · 27 tokens per session scan B daa9b2c14798

Subscribe to this mod's changes

setup is a skill published in the GitHub repository skyllwt/AutoSci (1,706 stars, last pushed 1mo ago), licensed MIT. It adds 27 tokens to every session and 2,384 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it B with 2 findings (sends data to an external url, makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

setup compared with skills from other repositories

setup next to 6 skills from other repositories
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setupskyllwt/AutoSciSkill1.7k1mo agoMITB27Claude Code
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playwright-climicrosoft/playwrightSkill99kyesterdayApache-2.0A19Claude Code
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systematic-debuggingobra/superpowersSkill313k3d agoMITA21Claude Code
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chat-pet-sprite-creationmicrosoft/vscodeSkill195ktodayMITA53Claude Code, Codex