Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add skills/summer521521/contam_plugin/contam-mcpnpx skills add summer521521/CONTAM_plugin --skill contam-mcpgit clone --depth 1 https://github.com/summer521521/CONTAM_pluginWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/summer521521/contam_plugin/contam-mcp)<a href="https://agentmods.dev/skills/summer521521/contam_plugin/contam-mcp"><img src="https://agentmods.dev/badge/skills/summer521521/contam_plugin/contam-mcp.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00111 | $0.03405 |
| Opus 5 | $0.00056 | $0.01702 |
| Sonnet 5 | $0.00022 | $0.00681 |
| Haiku 4.5 | $0.00011 | $0.00341 |
Grade A, and why
contam-mcp scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 214 lines — stays where its author put it; the contents beside it link to each section on GitHub.
CONTAM Plugin
Use this skill when the user wants to inspect, diagnose, clone, batch-run, co-simulate, upgrade, compare, analyze, or export CONTAM projects through the contam MCP server.
Setup
- The plugin starts the MCP server through
scripts/start-contam-mcp.ps1. - The plugin also ships
scripts/Invoke-ContamProjectGuard.ps1for local PRJ hygiene, input checks, output cleanup, result-profile updates, and XLog triage. - The current official CONTAM release checked for this workflow is CONTAM 3.4.0.8, with command-line tools such as ContamX 3.4.0.3. Re-check the official NIST release page before changing executable assumptions.
CONTAM_PLUGIN_ROOTis set by the launcher when the plugin runs from this repository.CONTAM_HOMEmay point to the directory containing CONTAM executables.CONTAM_CHINESE_HOMEmay point to an extractedcontam_chineserelease; when set, the launcher uses those localized executables unless explicit tool paths override them.- Optional executable overrides:
CONTAMX_PATH,CONTAMW_PATH,PRJUP_PATH,SIMREAD_PATH,SIMCOMP_PATH. - The server targets command-line tools such as
contamx3.exe,prjup.exe,simread.exe, andsimcomp.exe; do not assume GUI automation throughcontamw3.exe.
Standard Flow
- Confirm the installation before running a case:
discover_contam_installationdiscover_contam_api_stack
- Find candidate project and result files:
list_contam_case_files
- Inspect the project before edits or simulation:
inspect_contam_projectdiagnose_contam_project
- If references are wrong, update only the requested fields:
update_contam_project_references
- For baseline/intervention studies, clone scenarios before running:
create_contam_case_variantrun_contam_case_matrix
- When a PRJ can run but needs ContamW-visible layout, apply SketchPad data before GUI review:
apply_contam_sketchpad_layout
- Before asking the user to open or run in ContamW, use the project guard script for local checks:
scripts/Invoke-ContamProjectGuard.ps1 -ProjectPath <file.prj> -Mode InputCheck -ResultProfile GuiSafeResults -CleanOutputs -RequireSingleProject
- For paper-style API workflows, use
contamxpywhen available:inspect_contamxpy_projectrun_contamxpy_cosimulation
- Run or upgrade the project:
run_contam_simulationupgrade_contam_project
- Compare, export, or quickly triage results:
compare_contam_sim_resultsexport_contam_sim_textanalyze_contam_text_results
What ships with it
1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 5d ago First seen · 214 lines · 111 tokens per session scan A 4be15d88e8a2
contam-mcp is a skill published in the GitHub repository summer521521/CONTAM_plugin (1 stars, last pushed 2mo ago), licensed MIT. It adds 111 tokens to every session and 3,405 once invoked, about $0.0006 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
Other skills, from other repositories
instrument-data-to-allotrope
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full…
exploratory-data-analysis
Perform bounded, local exploratory analysis of explicitly supported scientific files. Use for redacted CSV/TSV/JSON profiles; optional NumPy, HDF5, FASTA/FASTQ, and basic image metadata inspection; missingness/leakage audits; outlier and transformation sensitivity; and rigorous EDA report scaffolds. Other domain…
matlab
Build, review, migrate, and safely plan MATLAB or GNU Octave numerical workflows, including arrays, tabular/time data, tests, projects, graphics, MAT files, and explicit Python interoperability.
phylogenetics
Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.
research-engineer
An uncompromising Academic Research Engineer. Operates with absolute scientific rigor, objective criticism, and zero flair. Focuses on theoretical correctness, formal verification, and optimal implementation across any required technology.
mapping-to-snomed
Maps clinical concept spans extracted by OpenMed to SNOMED CT concepts through a USER-SUPPLIED terminology server (the user's own Ontoserver, Snowstorm, or UMLS/UTS), never a bundled vocabulary. Use when the user wants to code findings, disorders, procedures, body structures, or substances to SNOMED CT, run an ECL…