create-spsq

create-spsq is a skill for Codex from synapseq-foundation/synapseq. It costs 100 tokens per session (2,369 once invoked), scanned A, original, GPL-3.0.

A tool for creating new SynapSeq `.spsq` sequence files from a description or an existing sequence used as a read-only example.

In plain words
What is it for?
Use it to create, adapt, or revise SynapSeq sequences without changing the original files or occupied destinations.
Why use it?
It helps you make a new sequence or variation while protecting existing sequence files and checking that the new file is valid.

Skill for Codex

Written for Codex: agents/openai.yaml present. Also seen: installed under .agents/ (shared by several agents).

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/synapseq-foundation/synapseq/create-spsq
Any agent
npx skills add synapseq-foundation/synapseq --skill create-spsq
Clone the repo
git clone --depth 1 https://github.com/synapseq-foundation/synapseq

Made for: Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for create-spsq

README.md
[![agentmods](https://agentmods.dev/badge/skills/synapseq-foundation/synapseq/create-spsq.svg)](https://agentmods.dev/skills/synapseq-foundation/synapseq/create-spsq)
Your own site
<a href="https://agentmods.dev/skills/synapseq-foundation/synapseq/create-spsq"><img src="https://agentmods.dev/badge/skills/synapseq-foundation/synapseq/create-spsq.svg" alt="Measured on agentmods" height="20"></a>
Per session 100 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,369 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00100 $0.02369
Opus 5 $0.00050 $0.01184
Sonnet 5 $0.00020 $0.00474
Haiku 4.5 $0.00010 $0.00237

Measured 6d ago against content hash 851070e504d5, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-06, from the pricing page.

Security

Grade A, and why

create-spsq scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 6d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.agents/skills/create-spsq/SKILL.md · 128 lines

The source is not reproduced here

Licensed GPL-3.0

The repository is licensed GPL-3.0, which this catalogue does not treat as permission to reproduce the file. Read it at the source.

Read it on GitHub

Files

What ships with it

3 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 6d ago First seen · 128 lines · 100 tokens per session scan A 851070e504d5

Subscribe to this mod's changes

create-spsq is a skill published in the GitHub repository synapseq-foundation/synapseq (24 stars, last pushed yesterday), licensed GPL-3.0. It adds 100 tokens to every session and 2,369 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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