denario

denario is a skill for Claude Code, Codex from thesecondfox/skill. It costs 69 tokens per session (1,213 once invoked), scanned A, a copy of denario, MIT.

A multi-agent system for automating scientific research workflows from initial data analysis through publication-ready papers.

In plain words
What is it for?
Use it to generate research ideas, develop methods, run computational experiments, create visualisations, search the literature, and write journal-style LaTeX papers.
Why use it?
It brings several research tasks into one workflow, reducing the need to coordinate separate tools for hypotheses, experiments, literature searches, and writing.

Skill for Claude CodeCodex

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/thesecondfox/skill/denario
Any agent
npx skills add thesecondfox/skill --skill denario
Clone the repo
git clone --depth 1 https://github.com/thesecondfox/skill

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for denario

README.md
[![agentmods](https://agentmods.dev/badge/skills/thesecondfox/skill/denario.svg)](https://agentmods.dev/skills/thesecondfox/skill/denario)
Your own site
<a href="https://agentmods.dev/skills/thesecondfox/skill/denario"><img src="https://agentmods.dev/badge/skills/thesecondfox/skill/denario.svg" alt="Measured on agentmods" height="20"></a>
Per session 69 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,213 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin 97% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00069 $0.01213
Opus 5 $0.00034 $0.00607
Sonnet 5 $0.00014 $0.00243
Haiku 4.5 $0.00007 $0.00121

Measured yesterday against content hash 976e0f0f4343, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

denario scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

97% identical to denario — 3 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

Common_Skills/denario/SKILL.md · 214 lines

How it starts

The opening of the file, as written. The whole thing — 214 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Denario

Overview

Denario is a multiagent AI system designed to automate scientific research workflows from initial data analysis through publication-ready manuscripts. Built on AG2 and LangGraph frameworks, it orchestrates multiple specialized agents to handle hypothesis generation, methodology development, computational analysis, and paper writing.

When to Use This Skill

Use this skill when:

  • Analyzing datasets to generate novel research hypotheses
  • Developing structured research methodologies
  • Executing computational experiments and generating visualizations
  • Conducting literature searches for research context
  • Writing journal-formatted LaTeX papers from research results
  • Automating the complete research pipeline from data to publication

Installation

Install denario using uv (recommended):

uv init
uv add "denario[app]"

Or using pip:

uv pip install "denario[app]"

For Docker deployment or building from source, see references/installation.md.

LLM API Configuration

Denario requires API keys from supported LLM providers. Supported providers include:

  • Google Vertex AI
  • OpenAI
  • Other LLM services compatible with AG2/LangGraph

Store API keys securely using environment variables or .env files. For detailed configuration instructions including Vertex AI setup, see references/llm_configuration.md.

Core Research Workflow

Denario follows a structured four-stage research pipeline:

1. Data Description

Define the research context by specifying available data and tools:

from denario import Denario

den = Denario(project_dir="./my_research")
den.set_data_description("""
Available datasets: time-series data on X and Y
Tools: pandas, sklearn, matplotlib
Research domain: [specify domain]
""")

2. Idea Generation

Generate research hypotheses from the data description:

den.get_idea()

This produces a research question or hypothesis based on the described data. Alternatively, provide a custom idea:

Read the full file on GitHub · 214 lines

Files

What ships with it

4 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. yesterday First seen · 214 lines · 69 tokens per session scan A 976e0f0f4343

Subscribe to this mod's changes

denario is a skill published in the GitHub repository thesecondfox/skill (3 stars, last pushed 5mo ago), licensed MIT. It adds 69 tokens to every session and 1,213 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. It is 97% identical to denario, differing in 3 lines, and is treated as a copy.

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