Conversational & memory-enabled AI research partner for multi-omics analysis. CLI + Desktop App (installers in Releases). From biological idea to full research paper.
This repository also configures its own agents. See what OmicsClaw tells them →
Skill Claude CodeCodex
Load when running spatial autocorrelation / hotspot / co-occurrence / neighbourhood-enrichment / Ripley K stats on a clustered spatial AnnData via squidpy. Skip when ranking spatially variable genes (use spatial-genes); tissue domain detection (use spatial-domains).
Skill Claude CodeCodex
Load when inferring pseudotime / lineage trajectories on a preprocessed spatial AnnData via DPT (default — diffusion pseudotime), CellRank (terminal-state + fate-probability), or Palantir (waypoint branch probabilities). Skip when the data has spliced/unspliced layers and you want velocity-driven dynamics (use…
Skill Claude CodeCodex
Load when estimating RNA velocity on a spatial AnnData with layers["spliced"] + layers["unspliced"] via scVelo (stochastic / deterministic / dynamical) or veloVI (deep generative). Skip when input lacks the spliced/unspliced layers (must be quantified upstream by velocyto / kb-python / STARsolo); non-spatial scRNA…
Skill Claude CodeCodex
Load when copying this directory to bootstrap a new OmicsClaw v2 skill (rename, fill in skill.yaml, regenerate). Skip when an existing skill already covers the request.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: