What is spatial-epidemiology?

A toolkit for studying how diseases are distributed across geographic areas. It includes tests for whether nearby locations have similar disease rates, methods for finding clusters, and models for mapping disease risk.

Use it to analyse spatial disease data, detect clusters, test location-based patterns, and create Bayesian disease-risk maps.

It helps identify geographic patterns that ordinary statistical analysis may miss, such as disease hotspots or areas with unusually similar rates.

spatial-epidemiology — Skill for Claude Code and Codex by xjtulyc

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent

npx skills add xjtulyc/awesome-rosetta-skills --skill spatial-epidemiology

Clone the repo

git clone --depth 1 https://github.com/xjtulyc/awesome-rosetta-skills

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

README.md

[![agentmods](https://agentmods.dev/badge/skills/xjtulyc/awesome-rosetta-skills/spatial-epidemiology/github.svg)](https://agentmods.dev/skills/xjtulyc/awesome-rosetta-skills/spatial-epidemiology)

Your own site

<a href="https://agentmods.dev/skills/xjtulyc/awesome-rosetta-skills/spatial-epidemiology"><img src="https://agentmods.dev/badge/skills/xjtulyc/awesome-rosetta-skills/spatial-epidemiology/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

Your own site · 80×15

<a href="https://agentmods.dev/skills/xjtulyc/awesome-rosetta-skills/spatial-epidemiology"><img src="https://agentmods.dev/badge/skills/xjtulyc/awesome-rosetta-skills/spatial-epidemiology.svg" alt="Reviewed on agentmods" width="80" height="20"></a>

Per session 41 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.

When invoked 5,851 The whole file, excluding the scripts and references it only reads on demand.

Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.

Origin unknown No closer match found in the catalogue.

Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

Model	Per session	Once invoked
Fable 5.1	$0.00041	$0.05851
Opus 5	$0.00020	$0.02926
Sonnet 5	$0.00008	$0.01170
Haiku 4.5	$0.00004	$0.00585

Measured 9d ago against content hash 77a5c444f258, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

spatial-epidemiology scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/17-public-health/spatial-epidemiology/SKILL.md · 623 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

9d ago First seen · 623 lines · 41 tokens per session scan A 77a5c444f258

Subscribe to this mod's changes

spatial-epidemiology is a skill published in the GitHub repository xjtulyc/awesome-rosetta-skills (34 stars, last pushed 5mo ago), with no licence file. It adds 41 tokens to every session and 5,851 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

Analytics and metrics LISA Moran-I Scientific cluster-detection disease-mapping public-health spatial-epidemiology