Open-source AI research assistant for biomedicine — chat to run RNA-seq, drug discovery, clinical analysis, and more. Built on Claude Code with 140 K-Dense scientific skills, real-time dashboard, and RStudio/JupyterLab integration. | Open-source biomedical AI research assistant that drives workflows such as transcriptomics, drug discovery, and clinical analysis through conversation, with 140 scientific skills and a real-time research dashboard.
This repository also configures its own agents. See what MedgeClaw tells them →
Skill Claude CodeCodex
Dispatch biomedical research and data analysis tasks to Claude Code with K-Dense Scientific Skills. Use this skill when the user asks to run any bioinformatics, genomics, drug discovery, clinical data analysis, proteomics, multi-omics, medical imaging, or scientific computation task. Also use for literature search…
Skill Claude CodeCodex
CHARLS (China Health and Retirement Longitudinal Study) database-specific knowledge for reproducing published papers. Use when reproducing or analyzing papers that use CHARLS data, including variable mapping from harmonized to raw questionnaire items, cognitive function scoring (episodic memory, mental status, TICS)…
Skill Claude CodeCodex
A setup guide for making matplotlib, seaborn, and Plotly charts display Chinese, Japanese, and Korean text correctly. These languages need suitable fonts to avoid missing-character boxes.
Skill Claude CodeCodex
A local research-dashboard skill for the MedgeClaw project, with documented components, saved state, and panel types.
Skill Claude CodeCodex
Send rich interactive cards with embedded images in Feishu group chats. Use when reporting progress, sharing analysis results, or presenting any content that benefits from mixed text+image layout in Feishu. Combines SVG UI templates (or matplotlib/PIL charts) with Feishu Card Kit API.
Skill Claude CodeCodex
Systematic methodology for reproducing published academic papers using provided data. Use when the user asks to reproduce, replicate, or verify results from a published paper, including sample selection, descriptive statistics, regression analyses, and generating reproduction reports (Markdown + LaTeX PDF). Covers the…
Skill Claude CodeCodex
Generate professional SVG UI panels for structured information display. Use when presenting lists, task checklists, pipeline/dependency status diagrams, or rich-text report layouts as SVG images. Covers four templates - list-panel, checklist-panel, pipeline-status, richtext-layout. Style is professional…
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