What is clinical-decision-support?

A document-generation skill for group-level clinical and pharmaceutical research. It produces cohort analyses grouped by biomarkers and treatment recommendation reports based on clinical evidence, with GRADE evidence ratings and decision algorithms.

Use it to compare outcomes across patient groups, prepare evidence-based treatment recommendations, and generate publication-ready LaTeX or PDF documents.

It organizes research findings into formal documents that support treatment strategy, drug development, research, or regulatory work. It is not intended for creating an individual patient’s bedside treatment plan.

clinical-decision-support — Skill for Claude Code by yanjumlinnb-boop

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent

npx skills add yanjumlinnb-boop/scientific-agent-skills --skill clinical-decision-support

Clone the repo

git clone --depth 1 https://github.com/yanjumlinnb-boop/scientific-agent-skills

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

README.md

[![agentmods](https://agentmods.dev/badge/skills/yanjumlinnb-boop/scientific-agent-skills/clinical-decision-support/github.svg)](https://agentmods.dev/skills/yanjumlinnb-boop/scientific-agent-skills/clinical-decision-support)

Your own site

<a href="https://agentmods.dev/skills/yanjumlinnb-boop/scientific-agent-skills/clinical-decision-support"><img src="https://agentmods.dev/badge/skills/yanjumlinnb-boop/scientific-agent-skills/clinical-decision-support/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

Your own site · 80×15

<a href="https://agentmods.dev/skills/yanjumlinnb-boop/scientific-agent-skills/clinical-decision-support"><img src="https://agentmods.dev/badge/skills/yanjumlinnb-boop/scientific-agent-skills/clinical-decision-support.svg" alt="Reviewed on agentmods" width="80" height="20"></a>

Per session 97 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.

When invoked 5,977 The whole file, excluding the scripts and references it only reads on demand.

Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.

Origin 94% copy Near-identical to another mod in the catalogue.

Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

Model	Per session	Once invoked
Fable 5.1	$0.00097	$0.05977
Opus 5	$0.00048	$0.02988
Sonnet 5	$0.00019	$0.01195
Haiku 4.5	$0.00010	$0.00598

Measured 12d ago against content hash 4b3e22ff3844, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

clinical-decision-support scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

The scan reads SKILL.md. This mod also ships 7 executable files (scripts/biomarker_classifier.py, scripts/build_decision_tree.py, scripts/create_cohort_tables.py, …), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

94% identical to clinical-decision-support — 12 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

skills/clinical-decision-support/SKILL.md · 510 lines

How it starts

The opening of the file, as written. The whole thing — 510 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Clinical Decision Support Documents

Description

Generate professional clinical decision support (CDS) documents for pharmaceutical companies, clinical researchers, and medical decision-makers. This skill specializes in analytical, evidence-based documents that inform treatment strategies and drug development:

Patient Cohort Analysis - Biomarker-stratified group analyses with statistical outcome comparisons
Treatment Recommendation Reports - Evidence-based clinical guidelines with GRADE grading and decision algorithms

All documents are generated as publication-ready LaTeX/PDF files optimized for pharmaceutical research, regulatory submissions, and clinical guideline development.

Note: For individual patient treatment plans at the bedside, use the treatment-plans skill instead. This skill focuses on group-level analyses and evidence synthesis for pharmaceutical/research settings.

Writing Style: For publication-ready documents targeting medical journals, consult the venue-templates skill's medical_journal_styles.md for guidance on structured abstracts, evidence language, and CONSORT/STROBE compliance.

Capabilities

Document Types

Patient Cohort Analysis

Biomarker-based patient stratification (molecular subtypes, gene expression, IHC)
Molecular subtype classification (e.g., GBM mesenchymal-immune-active vs proneural, breast cancer subtypes)
Outcome metrics with statistical analysis (OS, PFS, ORR, DOR, DCR)
Statistical comparisons between subgroups (hazard ratios, p-values, 95% CI)
Survival analysis with Kaplan-Meier curves and log-rank tests
Efficacy tables and waterfall plots
Comparative effectiveness analyses
Pharmaceutical cohort reporting (trial subgroups, real-world evidence)

Treatment Recommendation Reports

Evidence-based treatment guidelines for specific disease states
Strength of recommendation grading (GRADE system: 1A, 1B, 2A, 2B, 2C)
Quality of evidence assessment (high, moderate, low, very low)
Treatment algorithm flowcharts with TikZ diagrams
Line-of-therapy sequencing based on biomarkers
Decision pathways with clinical and molecular criteria
Pharmaceutical strategy documents
Clinical guideline development for medical societies

Read the full file on GitHub · 510 lines

Files

What ships with it

21 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

12d ago First seen · 510 lines · 97 tokens per session scan A 4b3e22ff3844

Subscribe to this mod's changes

clinical-decision-support is a skill published in the GitHub repository yanjumlinnb-boop/scientific-agent-skills (2 stars, last pushed 2mo ago), licensed MIT. It adds 97 tokens to every session and 5,977 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. It is 94% identical to clinical-decision-support, differing in 12 lines, and is treated as a copy.

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