hugging-science

hugging-science is a skill for Claude Code, Codex from yanjumlinnb-boop/scientific-agent-skills. It costs 115 tokens per session (2,277 once invoked), scanned A, a copy of hugging-science, MIT.

A curated index of scientific datasets, machine-learning models, articles, and interactive demos across areas such as biology, medicine, physics, and genomics.

In plain words
What is it for?
Use it to find datasets, models, demonstrations, and background material for scientific AI and machine-learning projects.
Why use it?
It narrows scientific machine-learning research to selected resources instead of leaving you to search broad, mixed-quality sources.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to find datasets, models, demonstrations, and background material for scientific AI and machine-learning projects.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/yanjumlinnb-boop/scientific-agent-skills/hugging-science
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add yanjumlinnb-boop/scientific-agent-skills --skill hugging-science
Clone the repo
git clone --depth 1 https://github.com/yanjumlinnb-boop/scientific-agent-skills

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for hugging-science

README.md
[![agentmods](https://agentmods.dev/badge/skills/yanjumlinnb-boop/scientific-agent-skills/hugging-science/github.svg)](https://agentmods.dev/skills/yanjumlinnb-boop/scientific-agent-skills/hugging-science)
Your own site
<a href="https://agentmods.dev/skills/yanjumlinnb-boop/scientific-agent-skills/hugging-science"><img src="https://agentmods.dev/badge/skills/yanjumlinnb-boop/scientific-agent-skills/hugging-science/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for hugging-science

Your own site · 80×15
<a href="https://agentmods.dev/skills/yanjumlinnb-boop/scientific-agent-skills/hugging-science"><img src="https://agentmods.dev/badge/skills/yanjumlinnb-boop/scientific-agent-skills/hugging-science.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 115 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,277 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin 98% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00115 $0.02277
Opus 5 $0.00057 $0.01138
Sonnet 5 $0.00023 $0.00455
Haiku 4.5 $0.00012 $0.00228

Measured 12d ago against content hash cef7029ebe80, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

hugging-science scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

The scan reads SKILL.md. This mod also ships 1 executable file (scripts/fetch_catalog.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

98% identical to hugging-science — 23 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

skills/hugging-science/SKILL.md · 131 lines

How it starts

The opening of the file, as written. The whole thing — 131 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Hugging Science

Hugging Science is a curated, LLM-friendly index of scientific datasets, models, blog posts, and interactive demos for ML researchers. Use it when a scientific ML question lands in front of you — it's much higher signal than generic search and the entries are pre-filtered for quality and openness.

There are two related surfaces, and you should use both:

  • The catalog at huggingscience.co — a static, parseable index of resources across 17 scientific domains. It exposes llms.txt (compact), llms-full.txt (full content), and topics/<slug>.md (per-domain). These are markdown files designed to be fetched and read.
  • The hugging-science Hugging Face organizationhuggingface.co/hugging-science — community-submitted datasets, a few models, and ~27 interactive Spaces (notably BoltzGen for protein/binder design, Dataset Quest for submissions, and Science Release Heatmap for ecosystem visualization).

The catalog points to resources hosted on the broader Hugging Face Hub. So an entry like arcinstitute/opengenome2 is a regular HF dataset that you load with the datasets library; an entry like facebook/esm2_t33_650M_UR50D is a regular HF model you load with transformers. The catalog's job is curation and discovery; usage goes through standard Hugging Face APIs.

When to use this skill

Engage this skill when the user's task involves AI/ML applied to science. Common signals:

  • Names a scientific domain (protein, genome, molecule, crystal, weather, climate, galaxy, EEG, microbiome, pathology, plasma, …)
  • Asks "is there a dataset/model for X" where X is scientific
  • Wants to fine-tune on scientific data, evaluate on scientific benchmarks, or reproduce a scientific ML paper
  • Asks about specific known scientific models (Evo-2, ESM2, BoltzGen, Nucleotide Transformer, AlphaFold-derived, etc.)
  • Needs an interactive demo for a scientific task (binder design, theorem proving, etc.)

If the task is generic ML (recommendation systems, chatbot RAG, vision on cats and dogs), this skill is not the right tool — defer to general HF Hub knowledge instead.

Read the full file on GitHub · 131 lines

Files

What ships with it

6 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 131 lines · 115 tokens per session scan A cef7029ebe80

Subscribe to this mod's changes

hugging-science is a skill published in the GitHub repository yanjumlinnb-boop/scientific-agent-skills (2 stars, last pushed 2mo ago), licensed MIT. It adds 115 tokens to every session and 2,277 once invoked, about $0.0006 per session on Opus 5. A static security scan graded it A with 0 findings. It is 98% identical to hugging-science, differing in 23 lines, and is treated as a copy.

Related

Other skills, from other repositories

arboreto

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for…

K-Dense-AI/scientific-agent-skills · 66 tokens

pyhealth

Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, eICU, OMOP, SleepEDF, ChestXray14, EHRShot), defining tasks (mortality, readmission, length-of-stay, drug recommendation, sleep staging, ICD coding, EEG events), instantiating models (Transformer…

K-Dense-AI/scientific-agent-skills · 216 tokens

torchdrug

Build and troubleshoot TorchDrug 0.2.1 workflows for molecular graphs, property prediction, self-supervised pretraining, molecule generation, retrosynthesis, protein representation learning, and knowledge graph reasoning. Use when code imports torchdrug or needs its datasets, models, tasks, or Engine.

K-Dense-AI/scientific-agent-skills · 61 tokens

deepspot-m

Generate transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Use when you need spatial gene expression in log1p-CPM for 224x224 tiles at about 20x, want to query protein-coding genes by symbol instead of a fixed panel, or want to run prediction across a whole slide after tiling with…

K-Dense-AI/scientific-agent-skills · 80 tokens

nemo-mbridge-perf-expert-parallel-overlap

Validate and use MoE expert-parallel communication overlap in Megatron-Bridge, including overlapmoeexpertparallelcomm, delaywgradcompute, and flex dispatcher backends such as DeepEP and HybridEP.

NVIDIA/skills · 56 tokens

pick-a-pii-model

Select an on-device OpenMed PII model from the committed registry by language, runtime format, and size budget, then require recall validation before deployment. Use when an agent must choose a local PII detector for CPU, Apple Silicon, or a mobile export without relying on live model discovery.

maziyarpanahi/openmed · 64 tokens