Skill Claude CodeCodex
Comprehensive scientific literature search across PubMed, arXiv, bioRxiv, medRxiv. Natural language queries powered by Valyu semantic search.
not rated 60 5mo ago B 35 tokens
copy · 100% MIT
60Stars on the repository
200Mods indexed here, across every type
5mo agoLast push, which is what freshness is scored on
MITLicence, which decides whether bodies are shown
literature
98Skill Claude CodeCodex
Comprehensive academic literature search and synthesis across 15+ sources.
not rated 60 5mo ago A 0 tokens
copy · 98% MIT
Skill Claude CodeCodex
AI-powered manuscript review and revision system inspired by APRES (ICLR 2026). Evaluates scientific manuscripts using ScholarEval 8-dimension rubric plus citation-predictive heuristics, then performs targeted revisions while preserving core scientific claims. Outputs before/after comparison with improvement metrics.…
not rated 60 5mo ago A 118 tokens
original MIT
Skill Claude Code needs its repo
Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, deep integration with research-lookup for data gathering, and multi-framework…
not rated 60 5mo ago A 89 tokens
copy · 94% MIT
market-research
101Skill Claude CodeCodex
Conduct market research, competitive analysis, investor due diligence, and industry intelligence with source attribution and decision-oriented summaries. Use when the user wants market sizing, competitor comparisons, fund research, technology scans, or research that informs business decisions.
not rated 60 5mo ago A 50 tokens
copy · 92% MIT
markitdown
102Skill Claude Code needs its repo
Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.
not rated 60 5mo ago B 53 tokens
copy · 92% MIT
matchms
103Skill Claude CodeCodex
Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral libraries. Best for metabolite identification, spectral matching, library searching. For full LC-MS/MS proteomics…
not rated 60 5mo ago A 62 tokens
copy · 83% MIT
materials
104Skill Claude CodeCodex
Computational materials science, simulation, and property prediction.
not rated 60 5mo ago A 0 tokens
original MIT
matlab
105Skill Claude CodeCodex
MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computing. Use when writing MATLAB/Octave scripts for linear algebra, signal processing, image processing, differential equations, optimization, statistics, or creating scientific visualizations. Also use when…
not rated 60 5mo ago B 93 tokens
copy · 88% MIT
matplotlib
106Skill Claude CodeCodex needs its repo
Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick statistical plots use seaborn; for interactive plots use plotly; for…
not rated 60 5mo ago A 77 tokens
copy · 81% MIT
medchem
107Skill Claude CodeCodex needs its repo
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.
not rated 60 5mo ago A 39 tokens
copy · 91% MIT
biomed-dispatch
108Skill Claude CodeCodex
Dispatch biomedical research and data analysis tasks to Claude Code with K-Dense Scientific Skills. Use this skill when the user asks to run any bioinformatics, genomics, drug discovery, clinical data analysis, proteomics, multi-omics, medical imaging, or scientific computation task. Also use for literature search…
not rated 60 5mo ago A 85 tokens
original MIT
cjk-viz
109Skill Claude CodeCodex
A setup helper for finding fonts that can display Chinese, Japanese, and Korean text in charts. It configures plotting libraries so labels, titles, legends, and minus signs render correctly.
not rated 60 5mo ago A 71 tokens
original MIT
medge-dashboard
110Skill Claude CodeCodex
A local web dashboard for showing the progress, status, code, files, tables, images, and outputs of a research task. It reads task information from a state file and refreshes the page as that information changes.
not rated 60 5mo ago A 0 tokens
original MIT
feishu-rich-card
111Skill Claude CodeCodex
Send rich interactive cards with embedded images in Feishu group chats. Use when reporting progress, sharing analysis results, or presenting any content that benefits from mixed text+image layout in Feishu. Combines SVG UI templates (or matplotlib/PIL charts) with Feishu Card Kit API.
not rated 60 5mo ago A 62 tokens
original MIT
svg-ui-templates
112Skill Claude CodeCodex
Generate professional SVG UI panels for structured information display. Use when presenting lists, task checklists, pipeline/dependency status diagrams, or rich-text report layouts as SVG images. Covers four templates - list-panel, checklist-panel, pipeline-status, richtext-layout. Style is professional…
not rated 60 5mo ago A 71 tokens
original MIT
medrxiv-search
113Skill Claude CodeCodex
Search medRxiv medical preprints with natural language queries. Powered by Valyu semantic search.
not rated 60 5mo ago B 24 tokens
copy · 100% MIT
Skill Claude CodeCodex
Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.
not rated 60 5mo ago A 53 tokens
copy · 84% MIT
modal
115Skill Claude CodeCodex
Run Python code in the cloud with serverless containers, GPUs, and autoscaling. Use when deploying ML models, running batch processing jobs, scheduling compute-intensive tasks, or serving APIs that require GPU acceleration or dynamic scaling.
not rated 60 5mo ago A 46 tokens
original MIT
Skill Claude CodeCodex
Autonomous molecular dynamics simulation pipeline inspired by DynaMate (2026). Designs, executes, and analyzes complete MD workflows for protein and protein-ligand systems. Covers structure retrieval, system preparation, minimization, equilibration, production, and trajectory analysis (RMSD, RMSF, hydrogen bonds…
not rated 60 5mo ago A 131 tokens
original MIT
molfeat
117Skill Claude CodeCodex
Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.
not rated 60 5mo ago A 47 tokens
copy · 89% MIT
networkx
118Skill Claude CodeCodex
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks…
not rated 60 5mo ago A 85 tokens
copy · 86% MIT
neurokit2
119Skill Claude CodeCodex
Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements. Applicable for heart rate…
not rated 60 5mo ago A 96 tokens
copy · 94% MIT
Skill Claude CodeCodex needs its repo
Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuropixels 1.0/2.0 extracellular electrophysiology. Use when working with neural recordings, spike sorting, extracellular…
not rated 60 5mo ago A 109 tokens
copy · 89% MIT
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