Skill Claude CodeCodex
Precheck biological and interpretation risks before selecting perturbation targets or guide designs.
2 2mo ago A 21 tokens
Skill Claude CodeCodex
Summarize the current literature consensus, disagreements, and evidence strength for a biological question.
2 2mo ago A 24 tokens
Skill Claude CodeCodex
Validate whether a marker set supports a proposed cell type or cell state and explain the main caveats.
2 2mo ago A 24 tokens
Skill Claude CodeCodex
Build positive and negative marker panels for a cell type or state and explain the confidence of the proposed panel.
2 2mo ago A 25 tokens
Skill Claude CodeCodex
Convert between molarity, mass, and volume using molecular weight.
2 2mo ago A 19 tokens
Skill Claude CodeCodex
Look up gene description and location via NCBI Gene (esearch/efetch).
2 2mo ago A 23 tokens
Skill Claude CodeCodex
Advise on normalization for scRNA (library size, log, SCTransform, etc.).
2 2mo ago A 23 tokens
Skill Claude CodeCodex
Map genes across species and explain confidence, ambiguity, and biological caveats.
2 2mo ago A 19 tokens
paper_triage
33Skill Claude CodeCodex
Triage a paper for biological relevance, extract the main claims, and separate evidence-backed takeaways from abstract-only impressions.
2 2mo ago A 28 tokens
Skill Claude CodeCodex
Check whether paralogs or compensatory family members may weaken interpretation of a perturbation target.
2 2mo ago A 26 tokens
Skill Claude CodeCodex
Look up pathway or GO/Reactome/KEGG term definitions and key genes.
2 2mo ago A 21 tokens
Skill Claude CodeCodex
Suggest a control strategy for perturbation experiments, including non-targeting, positive, and interpretation controls.
2 2mo ago A 27 tokens
Skill Claude CodeCodex
Compare gene signatures across perturbations and suggest clustering or grouping.
2 2mo ago A 18 tokens
Skill Claude CodeCodex
Estimate the cell budget and practical coverage needed for a Perturb-seq design.
2 2mo ago A 24 tokens
Skill Claude CodeCodex
Generate a 96- or 384-well plate map for perturbations and replicates.
2 2mo ago A 23 tokens
Skill Claude CodeCodex
Advise on PCR primer design (Tm, length, GC%, avoiding secondary structure).
2 2mo ago A 22 tokens
Skill Claude CodeCodex
Retrieve a lab protocol or SOP from the local knowledge base and summarize the parts that matter for the current experiment.
2 2mo ago A 27 tokens
Skill Claude CodeCodex
Recommend a replicate-aware pseudobulk strategy for single-cell differential expression and explain the design choices.
2 2mo ago A 26 tokens
Skill Claude CodeCodex
Fetch and summarize a PubMed article by PMID (abstract, key methods, key findings).
2 2mo ago A 24 tokens
Skill Claude CodeCodex
Search PubMed for articles by query; return top N PMIDs with titles, year, journal, and link.
2 2mo ago A 27 tokens
Skill Claude CodeCodex
Parse common pipeline log/output and summarize metrics and status.
2 2mo ago A 16 tokens
Skill Claude CodeCodex
Propose safe commands and directory hygiene for running a pipeline.
2 2mo ago A 18 tokens
Skill Claude CodeCodex
Turn single-cell RNA-seq summary metrics into a practical QC checklist with explicit assumptions and threshold recommendations.
2 2mo ago A 27 tokens
Skill Claude CodeCodex
Suggest Scanpy/Python commands for basic scRNA QC (filtering, mito, UMI).
2 2mo ago A 26 tokens