Skill Claude CodeCodex
Ship a SciClaw software change through an isolated worktree, implementation, pruning, verification, commit, push, draft pull request, CI closeout, and independent review. Use when asked to ship a job, complete a change through PR, prepare a release candidate, or follow the repository's happy path toward Homebrew…
Cursor rule Cursor
Papercuts from Sol/ImageMagick/release cycles — release, brew, CI, and workspace hygiene for sciClaw agents.
Instructions file CodexOpenCode
AGENTS.md instructions for drpedapati/sciclaw: For end-to-end implementation and pull-request work, use the vendored repository skill at .agents/skills/ship-job/SKILL.md. Read it completely before changing files, and use .agents/skills/ship-job/references/sciclaw-release.md for any separately authorized merge…
Skill Claude CodeCodex
Inspect, schema, and fill true AcroForm PDFs using sciClaw's pdfforminspect, pdfformschema, and pdfformfill tools. Use when: (1) checking whether a PDF is a real fillable AcroForm, (2) listing form field names, types, and choices, (3) filling a supported form from structured values, (4) preparing reviewable insurance…
Skill Claude CodeCodex
Build publication-grade Mermaid diagrams with consistent styling and SVG-first export for manuscript assets.
Skill Claude CodeCodex
Define benchmark runs and log outcomes with consistent metrics, acceptance criteria, and reproducible artifact references.
Skill Claude CodeCodex
Search and summarize preprints from bioRxiv/medRxiv with explicit date windows and traceable query logs.
Skill Claude CodeCodex
Read, edit, and diff Word documents (.docx) with tracked changes and comments using the docx-review CLI — a .NET 8 tool built on Microsoft's Open XML SDK. Ships as a single 12MB native binary (no runtime). Use when: (1) Adding tracked changes (replace, delete, insert) to a .docx, (2) Adding anchored comments to a…
Skill Claude CodeCodex
Capture experiment provenance with reproducible run metadata, artifact pointers, and decision logs for scientific claims.
Skill Claude CodeCodex
Create "How X Works" deep-dive explainer websites with the curious, technical-but-accessible style of howkeyboardswork.com. Use when asked to explain how something works, create an educational single-page guide, or build an interactive explainer site on any topic.
Skill Claude CodeCodex
Rewrite AI-generated text to sound naturally human-written. Use when asked to humanize text, make writing sound less AI, bypass AI detection, rewrite for natural tone, or convert robotic/formal text to conversational style. Triggers on "humanize this", "make this sound human", "rewrite naturally", "anti-AI detection"…
Skill Claude CodeCodex
Generate a standalone image, a visual asset for another artifact, or a complete image-rendered presentation slide. Use when the user asks to generate, illustrate, visualize, make an image for a slide, improve a presentation with generated imagery, or create an image-generated slide. Preserve the explicitly requested…
Skill Claude CodeCodex
Use this skill whenever scientific image assets need deterministic preprocessing (resize, crop, convert, DPI normalization, montage/contact sheets) using ImageMagick 7 magick.
Skill Claude CodeCodex
Create clean first-draft Word documents from Markdown using pandoc, with sciClaw auto-applying the bundled NIH reference template unless a custom --reference-doc is provided.
Skill Claude CodeCodex
Use this skill whenever PDF files are created, read, merged, split, transformed, OCR-processed, or data-extracted.
Skill Claude CodeCodex
De-identify clinical text for drafts, notes, and manuscript excerpts using phi-cleaner before sharing with external tools or collaborators. Use when: (1) Removing patient names/dates/identifiers from free-text notes, (2) Producing sanitized excerpts for LLM prompts, (3) Running a PHI detection pass to audit sensitive…
Skill Claude CodeCodex
Use this skill whenever .pptx slide decks are created, edited, summarized, templated, merged, or analyzed.
Skill Claude CodeCodex
Search PubMed, fetch article metadata, traverse citation graphs, and look up MeSH terms from the command line. Use when: (1) Searching PubMed with Boolean/MeSH queries, (2) Fetching article details by PMID (abstract, authors, DOI, MeSH terms), (3) Finding papers that cite a given article (cited-by), (4) Finding papers…
Skill Claude CodeCodex
Author and render Quarto manuscript documents (.qmd) with consistent formatting and loop-by-loop updates.
Skill Claude CodeCodex
Draft and revise scientific manuscript sections with claim-evidence alignment and reproducible method reporting.
Skill Claude CodeCodex
Use this skill whenever spreadsheet files (.xlsx, .xlsm, .csv, .tsv) are created, edited, cleaned, analyzed, or converted.
Skill Claude CodeCodex
Interact with GitHub using the gh CLI. Use gh issue, gh pr, gh run, and gh api for issues, PRs, CI runs, and advanced queries.
Skill Claude CodeCodex
Read and control I2C and SPI peripherals on Sipeed boards (LicheeRV Nano, MaixCAM, NanoKVM).
Skill Claude CodeCodex
Create or update AgentSkills. Use when designing, structuring, or packaging skills with scripts, references, and assets.