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fergupa/claude_plugins

Plugin Claude Code

Plugin marketplace listing 11 plugins: productivity, enterprise-search, cowork-plugin-management, sales, finance.

fergupa/claude_plugins

Plugin Claude Code

Connect to preclinical research tools and databases (literature search, genomics analysis, target prioritization) to accelerate early-stage life sciences R&D.

fergupa/claude_plugins

MCP server Claude CodeCodexCursor

Anthropic's hosted PubMed server: lets the agent search biomedical literature and read abstracts and citations from PubMed. Remote server at pubmed.mcp.claude.com.

fergupa/claude_plugins

MCP server Claude CodeCodexCursor

BioRender's hosted server: lets the agent create and edit scientific figures and diagrams in BioRender. Remote server at mcp.services.biorender.com.

fergupa/claude_plugins

MCP server Claude CodeCodexCursor

Anthropic's hosted bioRxiv/medRxiv server: lets the agent search and read life-science preprints. Remote server at mcp.deepsense.ai.

fergupa/claude_plugins

MCP server Claude CodeCodexCursor

Anthropic's hosted ClinicalTrials.gov server: lets the agent search registered clinical trials and read their status, conditions and interventions. Remote server at mcp.deepsense.ai.

fergupa/claude_plugins

MCP server Claude CodeCodexCursor

Anthropic's hosted ChEMBL server: lets the agent look up bioactive molecules, targets and assay data. Remote server at mcp.deepsense.ai.

fergupa/claude_plugins

MCP server Claude CodeCodexCursor

Sage Bionetworks' Synapse server: lets the agent find and read datasets, files and projects on the Synapse research data platform. Remote server at mcp.synapse.org.

fergupa/claude_plugins

MCP server Claude CodeCodexCursor

Wiley Scholar Gateway: lets the agent search and read Wiley's scholarly journals and books. Remote server at connector.scholargateway.ai.

fergupa/claude_plugins

MCP server Claude CodeCodexCursor

Owkin's hosted server: lets the agent query Owkin's biomedical and multi-omics knowledge. Remote server at mcp.k.owkin.com.

fergupa/claude_plugins

MCP server Claude CodeCodexCursor

Open Targets' hosted server: lets the agent query target–disease associations, drugs and genetics evidence. Remote server at mcp.platform.opentargets.org.

fergupa/claude_plugins

MCP server Claude CodeCodexCursor

Benchling's MCP server: lets the agent read and update entities, entries and results in a Benchling R&D workspace.

fergupa/claude_plugins

Command

Set up your bio-research environment and explore available tools.

fergupa/claude_plugins

Skill Claude CodeCodex

Generate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]", "Help me design a clinical study", "Research similar trials for [intervention]", or when developing FDA submission documentation for…

fergupa/claude_plugins

Skill Claude CodeCodex

Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full…

fergupa/claude_plugins

Skill Claude CodeCodex

Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis…

fergupa/claude_plugins

Skill Claude CodeCodex

This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions. Use this skill when users ask to pitch a new research idea, work through a project problem, evaluate project risks, plan research strategy, navigate…

fergupa/claude_plugins

Skill Claude CodeCodex

Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq analysis with PeakVI, (3) CITE-seq multi-modal analysis with totalVI, (4) multiome RNA+ATAC analysis with MultiVI, (5) spatial transcriptomics…

fergupa/claude_plugins

Skill Claude CodeCodex

Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.

fergupa/claude_plugins

Plugin Claude Code

Create, customize, and manage plugins tailored to your organization's tools and workflows. Configure MCP servers, adjust plugin behavior, and adapt templates to match how your team works.

fergupa/claude_plugins

Skill Claude CodeCodex

Customize or personalize a Claude Code plugin for a specific organization's tools and workflows. Use when users want to customize a plugin, replace tool placeholders, or configure MCP servers for a plugin. This skill requires Cowork mode with mounted plugin directories and will not work in remote or standard CLI…

fergupa/claude_plugins

Plugin Claude Code

Triage tickets, draft responses, escalate issues, and build your knowledge base. Research customer context and turn resolved issues into self-service content.

fergupa/claude_plugins

Command

Draft a professional customer-facing response tailored to the situation and relationship.

fergupa/claude_plugins

Command

Package an escalation for engineering, product, or leadership with full context.