scdenney

56 mods in 1 plugin, 1 repository, 67 stars between them.

advisor

01

scdenney/open-science-skills

Skill Codex

Consult an independent, read-only GPT-6 Astra advisor before committing to a substantive interpretation, approach, or final result. Not for routine work, implementation, or file edits. Uses gpt-6-astra at an effort matched to the question.

not rated 67 +2 changed 9d ago A 52 tokens

citation-check

02

scdenney/open-science-skills

Skill Codex

Audit a manuscript's citations for fabricated sources, DOIs that resolve to the wrong work, in-text and reference-list mismatches, style, and claim support, verified against Crossref and OpenAlex. Use to check citations, references, a .bib file, or DOIs.

not rated 67 +2 changed 9d ago A 59 tokens

conjoint-cleaning

03

scdenney/open-science-skills

Skill Codex

Turns a raw Qualtrics conjoint export into analysis-ready long-format data: implementation identification, reshaping, choice-profile alignment, reference categories, and pilot exclusion. Use when a conjoint CSV needs cleaning, reshaping, or debugging before AMCE estimation.

not rated 67 +2 changed 9d ago A 55 tokens

conjoint-design

04

scdenney/open-science-skills

Skill Codex

Designs conjoint and factorial-vignette experiments: attributes and restrictions, effective-N power, estimand choice among AMCE, marginal means, and AMIE, forced choice versus rating, and PAP tiers. Use when planning a conjoint, critiquing an attribute table, sizing respondents and tasks, or testing interactions.

not rated 67 +2 changed 9d ago A 67 tokens

scdenney/open-science-skills

Skill Codex

Reviews an existing conjoint study for threats to inference and returns severity-ranked findings on design, estimation, measurement error, external validity, and interpretation. Use when checking whether a conjoint design or analysis holds up, or answering referee comments on one.

not rated 67 +2 changed 9d ago A 52 tokens

scdenney/open-science-skills

Skill Codex

Designs multi-country survey experiments: case selection, localization and TRAPD translation, stimulus calibration, per-country power, and pooled versus per-country analysis with measurement-equivalence checks. Use when fielding the same experiment in several countries.

not rated 67 +2 changed 9d ago A 51 tokens

diverge

07

scdenney/open-science-skills

Skill Codex

Generates 3-5 conceptually distinct approaches (Novel, Surprising, Diverse, Conventional) and holds for selection before implementing. Use before committing to an approach when a task has more than one non-obvious solution; --codex delegates the brainstorm to a fresh subagent.

not rated 67 +2 changed 9d ago A 60 tokens

doc-to-markdown

08

scdenney/open-science-skills

Skill Codex

Read or convert documents (PDF, Office, OpenDocument, RTF, EPUB, CSV) in a research workflow: read directly or convert, pick the converter from document structure, and decide whether the Markdown is tracked or scratch. Use when a document must be read, quoted, summarized, searched, extracted, or added to a source…

not rated 67 +2 changed 9d ago A 83 tokens

fact-check

09

scdenney/open-science-skills

Skill Codex

Fact-check manuscript claims against their cited sources in a per-source Markdown knowledge base. Use to audit claim support, overclaiming, direction, scope, and misattribution after source intake is complete.

not rated 67 +2 changed 9d ago A 43 tokens

figure-table-audit

10

scdenney/open-science-skills

Skill Codex

End-stage QA for a finished figure and table set (callouts, numbering, cross-references, text-to-exhibit consistency, captions and notes, accessibility, SI and replication linkage). Use when preparing a submission.

not rated 67 +2 changed 9d ago A 48 tokens

figures

11

scdenney/open-science-skills

Skill Codex

Design and format publication-quality figures. Use for chart choice, color, scales, legends, captions, accessibility, and reproducible figure workflows.

not rated 67 +2 changed 9d ago A 31 tokens

hypothesis-building

12

scdenney/open-science-skills

Skill Codex

Turns a theory into falsifiable, pre-registerable hypotheses: DGP and DAG, identification, estimands, SESOIs, test choice among NHST, equivalence, and minimum-effect tests, scope conditions, and hypothesis tiers. Use when converting a research question into testable predictions or predicting a null.

not rated 67 +2 changed 9d ago A 66 tokens

journal-review

13

scdenney/open-science-skills

Skill Codex

Draft a referee report on someone else's manuscript for a journal editor, using five adversarial finders, a Blue Team error filter, a Chief Reviewer synthesis, and a Tone Guard legal pass. Use when the user has been asked to referee a manuscript; self-audits go to paper-review-lite or presubmit, author responses to…

not rated 67 +2 changed 9d ago A 72 tokens

list-experiment

14

scdenney/open-science-skills

Skill Codex

Designs and diagnoses list experiments (the item count technique): whether indirect measurement is warranted, control-list construction, design variants, estimators and assumption tests in the list package, and power. Use when measuring a sensitive item or debugging an implausible prevalence estimate.

not rated 67 +2 changed 9d ago A 57 tokens

literature-review

15

scdenney/open-science-skills

Skill Codex

Builds or audits a literature review: evidence map, closest prior work, gap verdict, and synthesis plan. Use to check whether a contribution is novel, map what a literature establishes, or organize a review; systematic reviews get a protocol scaffold.

not rated 67 +2 changed 9d ago A 53 tokens

scdenney/open-science-skills

Skill Codex

Reads a model's own uncertainty from token log-probabilities: collecting and aggregating label logprobs, confidence tiers and margins for triage, calibration against human labels (ECE, Brier, reliability diagrams), downstream use, and reproducibility. Use for per-item classifier confidence or routing low-confidence…

not rated 67 +2 changed 9d ago A 84 tokens

methods-reporting

17

scdenney/open-science-skills

Skill Codex

Audit a methods section against a 45-item checklist drawn from the APSA Experimental Section rubric, JARS-Quant, CONSORT, and DA-RT. Use before submission or archiving, or to document a pre-analysis-plan deviation.

not rated 67 +2 changed 9d ago A 52 tokens

model-committee

18

scdenney/open-science-skills

Skill Codex

Run one consequential, contestable decision through a deliberative committee of GPT-6 Astra and Claude Opus, chaired by fable (default), astra, opus, or sol. Not for factual lookups, brainstorming, routine implementation, independent-coder reliability, or final professional judgment. Use when several options are…

not rated 67 +2 changed 9d ago A 92 tokens

scdenney/open-science-skills

Skill Claude CodeCodex

Runs several language models as independent coders on one labeling or discovery task and treats disagreement as data. Covers diverse panel assembly, independent voting, consensus rules, Cohen’s and Fleiss kappa, Krippendorff’s alpha, correlated-error limits on validity claims, human validation, and reporting. Use when…

not rated 67 +2 changed 9d ago A 128 tokens

narrative-building

20

scdenney/open-science-skills

Skill Codex

Drafts or audits a scientific paper's introduction: real-world motivation, evidence audit, theory-to-if-then funnel with a named estimand, bridges across experiments, and calibrated contributions. Use to write, frame, or critique an introduction.

not rated 67 +2 changed 9d ago A 53 tokens

paper-review-lite

21

scdenney/open-science-skills

Skill Codex

Run a pre-submission manuscript audit covering argument, numerics, references, writing, figures, methods, preregistration, and replication readiness. Add --codex for a cross-model pass in which Codex and Claude review independently and verify each other's findings.

not rated 67 +2 changed 9d ago A 56 tokens

paper-tex

22

scdenney/open-science-skills

Skill Codex

Typeset a working paper or journal submission in house-style LaTeX from Markdown, Word, TeX, ODT, RTF, or HTML. Use to convert drafts, build PDFs, or prepare journal-specific spacing, limits, anonymization, disclosures, and citations.

not rated 67 +2 changed 9d ago A 59 tokens

scdenney/open-science-skills

Skill Codex

Writes or reviews a pre-analysis plan before data collection: registry choice (OSF, AEA, AsPredicted, registered reports), locked models and decision rules, code run on simulated data, contingencies, and deviation records. Use when drafting or auditing a pre-registration or PAP, choosing a registry, or handling a…

not rated 67 +2 changed 9d ago A 70 tokens

qualtrics-ops

24

scdenney/open-science-skills

Skill Codex

Operate or audit a live Qualtrics survey via the v3 APIs without breaking fielding: publish gating, quotas, flow routing, embedded data, panel-vendor redirects, read-back verification, and a read-only pre-fielding audit. Use when publishing or patching a fielding instrument, when a quota counts but never blocks, or…

not rated 67 +2 changed 9d ago A 77 tokens

At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: