scdenney

60 mods across 1 repository, 50 stars between them.

scdenney/open-science-skills

Skill Claude CodeCodex

Run a cross-model adversarial pre-submission audit from Codex. Use when a user explicitly requests the heavier paper-review-lite-codex workflow, independent Codex and Claude review passes, or cross-model verification of a manuscript. Apply the paper-review-lite protocol, cross-check findings against the manuscript…

50 14d ago A 75 tokens

paper-review-lite

26

scdenney/open-science-skills

Skill Claude CodeCodex

Run a pre-submission manuscript audit covering argument, numerics, references, writing, figures, methods, preregistration, and replication readiness.

50 14d ago A 33 tokens

paper-tex

27

scdenney/open-science-skills

Skill Claude CodeCodex

Typeset a working paper or journal submission in house-style LaTeX from Markdown, Word, TeX, ODT, RTF, or HTML. Use to convert drafts, build PDFs, or prepare journal-specific spacing, limits, anonymization, disclosures, and citations.

50 14d ago A 59 tokens

post-ocr-cleanup

28

scdenney/open-science-skills

Skill Claude CodeCodex

Clean post-OCR research text. Use for correction, quality assurance, multilingual handling, uncertainty preservation, and provenance-aware cleanup.

50 14d ago A 31 tokens

scdenney/open-science-skills

Skill Claude CodeCodex

Write pre-analysis plans and preregistrations. Use for PAP structure, registry requirements, estimands, analysis strategy, exclusions, and deviation planning.

50 14d ago A 34 tokens

qualtrics-ops

30

scdenney/open-science-skills

Skill Claude CodeCodex

Operate a live Qualtrics survey via the v3 APIs without breaking fielding. Publish gating, quotas, flow routing, embedded data, panel-vendor redirects, and read-back verification.

50 14d ago A 44 tokens

replication-package

31

scdenney/open-science-skills

Skill Claude CodeCodex

Scaffold or audit a social-science replication package at a target directory. Generates folder structure, README, master.R, figure/table crosswalk, codebook template, LICENSE placeholder, .gitignore, and pre-release checklist. Adapted from Yusaku Horiuchi's replication-package-guide with FAIR-principle integration…

50 14d ago A 90 tokens

research-repo

32

scdenney/open-science-skills

Skill Claude CodeCodex

Scaffold or audit an entire research project repository organized around its source library. Use when starting, structuring, organizing, or reviewing a research repo. Build sources/{og,md,unprocessed}, references.bib, a PDF-to-Markdown converter, a repo-local process-source skill, AGENTS.md, .gitignore, .venv, and the…

50 14d ago A 102 tokens

research-wayfinder

33

scdenney/open-science-skills

Skill Claude CodeCodex

Plan a research project as a durable decision map, resolving one design decision per session until the destination is a defensible, pre-registerable design. Not for executing analyses or writing the paper. Use at the start of a project, when a design has more open decisions than one conversation holds, or when…

50 14d ago A 68 tokens

spawn

34

scdenney/open-science-skills

Skill Claude CodeCodex

Spawn full peer Codex or Claude sessions in their own panes and git worktrees — real sessions, not subagents — briefed by the lead and merged back. Not for bounded consults a subagent covers. Use when work must outlive or run beside this session, needs its own worktree, or must stay user-steerable.

50 14d ago A 71 tokens

survey-data-audit

35

scdenney/open-science-skills

Skill Claude CodeCodex

Audit fielded survey response data for registered elements, data quality, bot and AI-automation screening, and sample integrity. Emits an appendix-ready quality report.

50 14d ago A 36 tokens

survey-design

36

scdenney/open-science-skills

Skill Claude CodeCodex

Design survey instruments. Use for question wording, scales, flow, pretesting, respondent burden, and social-desirability mitigation.

50 14d ago A 29 tokens

survey-flow-audit

37

scdenney/open-science-skills

Skill Claude CodeCodex

Pre-fielding audit of a live survey over the platform API, with an optional browser walk. Consent-before-anything gates, publish state, force-response completeness, quotas, vendor redirects, anti-bot instrumentation, language-arm symmetry.

50 14d ago A 51 tokens

tables

38

scdenney/open-science-skills

Skill Claude CodeCodex

Design and format publication-quality tables. Use for column order, row grouping, notes, statistical precision, accessibility, and reproducibility.

50 14d ago A 28 tokens

text-classification

39

scdenney/open-science-skills

Skill Claude CodeCodex

Design and validate LLM-based text classification. Use for codebooks, prompts, validation samples, agreement statistics, and reporting model-coded data.

50 14d ago A 32 tokens

topic-modeling

40

scdenney/open-science-skills

Skill Claude CodeCodex

Design and diagnose structural topic models. Use for STM specification, topic-count selection, coherence-exclusivity tradeoffs, validation, and interpretation.

50 14d ago A 32 tokens

vlm-ocr-evaluation

41

scdenney/open-science-skills

Skill Claude CodeCodex

Compare OCR systems before a bulk run: candidate set, stratified ground truth, CER/WER, normalization, per-language and per-stratum accuracy.

50 14d ago A 37 tokens

vlm-ocr-pipeline

42

scdenney/open-science-skills

Skill Claude CodeCodex

Design VLM-based OCR pipelines. Use for model selection, prompting, architecture, multilingual documents, structured output, and evaluation planning.

50 14d ago A 33 tokens

oss

43

scdenney/open-science-skills

Plugin Claude Code

Open Science Skills (oss). 43 Claude Code skills for experimental social science and computational text analysis (including fable-orchestrate and opus-orchestrate, general multi-model orchestration workflows led by Fable 5 or by Opus 5; advisor, a single independent-second-reviewer consult in which the calling session.

50 14d ago A tokens not measured

advisor

44

scdenney/open-science-skills

Command

Consult Fable 5 as an independent second reviewer, always at max reasoning effort regardless of what this session runs at. Your session is the main seat — Opus 5, or Sonnet 5 for cheaper sustained work — and Fable holds the advisor seat. Use before committing to an interpretation or a substantial piece of…

50 14d ago A 0 tokens

citation-check

45

scdenney/open-science-skills

Command

Audit citation integrity for the task below. Check in-text/reference parity, DOI and URL status, author-year consistency, stale working papers, suspicious or unresolved sources, citation style, and whether key citations actually support the claims they are attached to.

50 14d ago A 0 tokens

conjoint-cleaning

46

scdenney/open-science-skills

Command

Apply conjoint data cleaning expertise to the task below. Cover the relevant aspects of Qualtrics column conventions, wide-to-long reshaping, choice variable mapping, attribute translation, pilot data detection, reference category selection, and validation based on what is needed.

50 14d ago A 0 tokens

conjoint-design

47

scdenney/open-science-skills

Command

Apply conjoint experiment design expertise to the task below. Cover the relevant aspects of attribute architecture, statistical power, AMCE/AMIE estimation, design variants, and quality checks based on what is needed.

50 14d ago A 0 tokens

scdenney/open-science-skills

Command

Run a conjoint diagnostics review of the task or study described below. Evaluate design integrity, estimation choices, measurement error, external validity, and interpretation against the diagnostic checklist.

50 14d ago A 0 tokens