SFETNI/Deep-Matter-Chem-Skills
Skill Claude CodeCodex
This skill covers the systematic provenance tracking, data versioning, and environment capture required to make computational materials science campaigns reproducible: DFT dataset provenance, MLP training experiment tracking, active learning iteration versioning, environment snapshots, model registry management, and…
SFETNI/Deep-Matter-Chem-Skills
Skill Claude CodeCodex
This skill covers publication-quality visualization for computational materials science, chemistry, atomistic simulation, electronic structure, and scientific ML: plotting scalar observables with matplotlib, rendering atomic structures and trajectories with OVITO, ASE, pymatgen, VESTA, nglview, and VMD, and building…
SFETNI/Deep-Matter-Chem-Skills
Skill Claude CodeCodex
This skill covers physics-informed neural networks (PINNs) for scientific and engineering modeling: strong-form and weak-form physics losses, PDE residuals, boundary and initial condition enforcement, inverse problems, parameter identification, surrogate modeling for PDE systems, optimizer choices, validation…
SFETNI/Deep-Matter-Chem-Skills
Skill Claude CodeCodex
This skill covers machine learning on small scientific datasets (roughly 20–2000 samples) in materials science and chemistry: leakage-safe splitting strategies for correlated structures and compositions, baseline model selection, descriptor screening, uncertainty quantification, learning curves, model selection under…
SFETNI/Deep-Matter-Chem-Skills
Skill Claude CodeCodex
This skill covers Bayesian optimization (BO) for materials discovery and chemistry design: surrogate model construction, acquisition function selection and optimization, batch and constrained BO, multi-objective Pareto-front search, multi-fidelity optimization, and integration with high-throughput DFT, experimental…
SFETNI/Deep-Matter-Chem-Skills
Skill Claude CodeCodex
This skill covers Gaussian process regression (GPR) for materials and chemistry datasets: descriptor selection, feature scaling, kernel design, small-data modeling, calibrated uncertainty, heteroscedastic noise, cross-validation, multi-output and multi-fidelity extensions, and integration with Bayesian optimization…
SFETNI/Deep-Matter-Chem-Skills
Skill Claude CodeCodex
This skill covers validation of surrogate models for materials and chemistry: leakage-safe train/validation/test splits, nested cross-validation, leave-one-group-out validation, uncertainty calibration, parity and residual diagnostics, interpolation versus extrapolation checks, descriptor-domain coverage, learning…
SFETNI/Deep-Matter-Chem-Skills
Skill Claude CodeCodex
This skill covers life-cycle assessment (LCA) for materials, chemicals, and manufacturing routes: goal and scope definition, functional units, system boundaries, inventory construction, allocation, impact assessment, uncertainty, scenario analysis, database provenance, prospective LCA, and sustainability-aware…
SFETNI/Deep-Matter-Chem-Skills
Skill Claude CodeCodex
This skill covers CALPHAD workflows for computational thermodynamics and materials design: thermodynamic database selection, equilibrium and metastable calculations, binary and ternary phase diagrams, Scheil solidification, chemical potentials, activities, driving forces, parameter assessment, uncertainty, and…
SFETNI/Scientific-Writing-Skills-Claude-Code-Codex
Command Claude Code
Run style calibration from context/ papers (Step 0c). Must be run before any section drafting begins, and approved by the human before proceeding.
SFETNI/Scientific-Writing-Skills-Claude-Code-Codex
Command Claude Code
Run the manuscript integrity checker as Step 0a. This command must be run before any drafting session, and again after any content changes.
SFETNI/Scientific-Writing-Skills-Claude-Code-Codex
Command Claude Code
Draft or improve the Discussion section using: argument flow review → claim calibration → reviewer perspective.
SFETNI/Scientific-Writing-Skills-Claude-Code-Codex
Command Claude Code
Comprehensive quality control for all figures and tables: QC → captions → visual consistency → table design.
SFETNI/Scientific-Writing-Skills-Claude-Code-Codex
Command Claude Code
Run the revision quality gate on the current section or full manuscript. Used both after individual sections and as the final pre-submission check.
SFETNI/Scientific-Writing-Skills-Claude-Code-Codex
Command Claude Code
Draft or improve the Introduction section using the three-skill chain: benchmark positioning → section drafting → claim calibration.
SFETNI/Scientific-Writing-Skills-Claude-Code-Codex
Command Claude Code
Draft or improve the Methods section using: methods writing → claim evidence verification.
SFETNI/Scientific-Writing-Skills-Claude-Code-Codex
Command Claude Code
Draft or improve the Results section using: results writing → figure QC → claim calibration.
SFETNI/Scientific-Writing-Skills-Claude-Code-Codex
Command Claude Code
Run a 4-role peer reviewer simulation across the complete manuscript. Each role is a bounded, read-only subagent. All reports are presented to the human before any revisions are considered.
SFETNI/Scientific-Writing-Skills-Claude-Code-Codex
Command Claude Code
Draft and QC the Supplementary Materials: scope approval → SM writing → figure QC for SM figures.
SFETNI/Scientific-Writing-Skills-Claude-Code-Codex
Instructions file
Claude Code instructions for SFETNI/Scientific-Writing-Skills-Claude-Code-Codex, covering claude.md — scientific-redaction-skills, what this framework is, mandatory step 0 protocol, skill routing and core rules.