Instructions file CodexOpenCode
Repository instructions for Codeg, a multi-agent coding workspace that brings several coding assistants into one desktop or server application. They describe its Rust backend, Next.js frontend, SQLite database, commands, and project structure.
Instructions file
Repository instructions for Codeg, a desktop and server workspace that combines several coding assistants. They describe its Rust and Next.js technology, SQLite database, package manager, project structure, and required checks.
Skill Claude CodeCodex
You MUST use this before any creative work - creating features, building components, adding functionality, or modifying behavior. Explores user intent, requirements and design before implementation.
Skill Claude CodeCodex
Use when facing 2+ independent tasks that can be worked on without shared state or sequential dependencies.
Skill Claude CodeCodex
Use when you have a written implementation plan to execute in a separate session with review checkpoints.
Skill Claude CodeCodex
Use when implementation is complete, all tests pass, and you need to decide how to integrate the work.
Skill Claude CodeCodex
Use when receiving code review feedback, before implementing suggestions, especially if feedback seems unclear or technically questionable - requires technical rigor and verification, not performative agreement or blind implementation.
Skill Claude CodeCodex
Use when completing tasks, implementing major features, or before merging to verify work meets requirements.
Skill Claude CodeCodex
Use when executing implementation plans with independent tasks in the current session.
Skill Claude CodeCodex
Use when encountering any bug, test failure, or unexpected behavior, before proposing fixes.
Skill Claude CodeCodex
Use when implementing any feature or bugfix, before writing implementation code.
Skill Claude CodeCodex
Use when starting feature work that needs isolation from current workspace or before executing implementation plans - ensures an isolated workspace exists via native tools or git worktree fallback.
Skill Claude CodeCodex
Use when starting any conversation - establishes how to find and use skills, requiring skill invocation before ANY response including clarifying questions.
Skill Claude CodeCodex
Use when about to claim work is complete, fixed, or passing, before committing or creating PRs - requires running verification commands and confirming output before making any success claims; evidence before assertions always.
Skill Claude CodeCodex
Use when you have a spec or requirements for a multi-step task, before touching code.
Skill Claude CodeCodex
Use when creating new skills, editing existing skills, or verifying skills work before deployment.
Skill Claude CodeCodex
Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure…
Skill Claude CodeCodex
Design experiments and studies BEFORE data is collected — choosing a design, randomizing, blocking, and laying out treatment combinations so the results will actually be interpretable. Use whenever someone is planning a study, asks how to assign subjects/samples to groups, mentions randomization, blocking…
Skill Claude CodeCodex
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with…
Skill Claude CodeCodex
Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to formulate testable hypotheses with predictions, propose mechanisms, and design experiments to test them. Follows scientific method framework. For open-ended ideation use scientific-brainstorming; for…
Skill Claude CodeCodex
Search 10 academic literature APIs for papers, preprints, citations, and open-access full text, and return results with reproducible provenance. Covers PubMed, PMC (full text), bioRxiv, medRxiv, arXiv, OpenAlex, Crossref, Semantic Scholar, CORE, Unpaywall. Use when searching for papers, citations, DOI/PMID/arXiv…
Skill Claude CodeCodex
Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria methodology assessment, statistical validity, reporting standards compliance (CONSORT/STROBE), and constructive feedback. Best for actual review writing, manuscript revision. For evaluating…
Skill Claude CodeCodex
Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and actionable feedback.
Skill Claude CodeCodex
Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for early-stage research planning when you do not have specific observations yet. For formulating testable hypotheses from data use…