chemistry
25Skill Claude CodeCodex
Computational chemistry, cheminformatics, and drug discovery workflows.
59 5mo ago A 0 tokens
copy · 95% MIT
cirq
26Skill Claude CodeCodex
Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level circuit design. For IBM hardware use qiskit; for quantum ML with autodiff use pennylane; for…
59 5mo ago A 67 tokens
original MIT
Skill Claude CodeCodex
Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure…
59 5mo ago A 68 tokens
copy · 88% MIT
Skill Claude CodeCodex
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading…
59 5mo ago A 97 tokens
copy · 94% MIT
Skill Claude CodeCodex
Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation…
59 5mo ago A 71 tokens
original MIT
Skill Claude CodeCodex
Search ClinicalTrials.gov with natural language queries. Find clinical trials, enrollment, and outcomes using Valyu semantic search.
59 5mo ago B 28 tokens
copy · 100% MIT
clinical
31Skill Claude CodeCodex
Clinical study design, statistical analysis, and regulatory compliance for medical research.
59 5mo ago A 0 tokens
copy · 97% MIT
Skill Claude CodeCodex
Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.
59 5mo ago A 47 tokens
copy · 86% MIT
Skill Claude CodeCodex
Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.
59 5mo ago A 45 tokens
copy · 91% MIT
Skill Claude CodeCodex
Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine.
59 5mo ago A 45 tokens
copy · 100% MIT
cobrapy
35Skill Claude CodeCodex
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
59 5mo ago A 38 tokens
copy · 84% MIT
Skill Claude CodeCodex
Create platform-native content systems for X, LinkedIn, TikTok, YouTube, newsletters, and repurposed multi-platform campaigns. Use when the user wants social posts, threads, scripts, content calendars, or one source asset adapted cleanly across platforms.
59 5mo ago A 55 tokens
copy · 100% MIT
Skill Claude CodeCodex
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
59 5mo ago A 39 tokens
original MIT
Skill Claude CodeCodex
Create high-quality ToolUniverse skills following test-driven, implementation-agnostic methodology. Integrates tools from ToolUniverse's 1,264+ tool library, creates missing tools when needed using devtu-create-tool, tests thoroughly, and produces skills with Python SDK + MCP support. Use when asked to create new…
59 5mo ago A 90 tokens
original MIT
dask
39Skill Claude CodeCodex
Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with existing pandas code. For out-of-core analytics on single machine use vaex; for in-memory speed…
59 5mo ago A 69 tokens
copy · 83% MIT
Skill Claude CodeCodex
Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use this skill when working with demographic data, economic indicators, health statistics, environmental data, or any public datasets available through Data Commons. Applicable for querying population…
59 5mo ago A 77 tokens
copy · 92% MIT
datamol
41Skill Claude CodeCodex
Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters…
59 5mo ago A 67 tokens
copy · 88% MIT
deepchem
42Skill Claude CodeCodex
Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featurization options and MoleculeNet benchmarks. Best for quick experiments with pre-trained models, diverse molecular representations. For graph-first…
59 5mo ago A 78 tokens
copy · 89% MIT
deeptools
43Skill Claude CodeCodex
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
59 5mo ago A 51 tokens
copy · 92% MIT
denario
44Skill Claude CodeCodex
Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational experiments, performing literature searches, or generating…
59 5mo ago A 69 tokens
copy · 89% MIT
Skill Claude CodeCodex
Automatically discover life science APIs online, create ToolUniverse tools, validate them, and prepare integration PRs. Performs gap analysis to identify missing tool categories, web searches for APIs, automated tool creation using devtu-create-tool patterns, validation with devtu-fix-tool, and git workflow…
59 5mo ago A 84 tokens
original MIT
Skill Claude CodeCodex
Create new scientific tools for ToolUniverse framework with proper structure, validation, and testing. Use when users need to add tools to ToolUniverse, implement new API integrations, create tool wrappers for scientific databases/services, expand ToolUniverse capabilities, or follow ToolUniverse contribution…
59 5mo ago C 75 tokens
original MIT
Skill Claude CodeCodex
TOP PRIORITY skill — find and immediately fix or remove every piece of wrong, outdated, or redundant information in ToolUniverse docs. Wrong code, broken links, incorrect counts, and overlapping instructions must be fixed or removed — never left in place. Runs five phases: (D) static method scan, (C) live code…
59 5mo ago A 140 tokens
original MIT
Skill Claude CodeCodex
Fix failing ToolUniverse tools by diagnosing test failures, identifying root causes, implementing fixes, and validating solutions. Use when ToolUniverse tools fail tests, return errors, have schema validation issues, or when asked to debug or fix tools in the ToolUniverse framework.
59 5mo ago A 57 tokens
original MIT