botference: Agent for Claude Code

.claude/agents/paper-writer.md

paper-writer is an agent for Claude Code from angadhn/botference. It costs 0 tokens per session (2,259 once invoked), scanned A, original, MIT.

An AI agent for writing or revising parts of academic journal papers. It follows a writing style guide and keeps the paper's wording and references consistent.

In plain words
What is it for?
It writes sections from an outline, revises flagged sections, or reviews an editor's changes before they are accepted or reverted.
Why use it?
It reduces the work of drafting sections, applying an approved revision plan, and checking proposed edits across a paper.

Agent for Claude Code

Written for Claude Code: installed under .claude/.

This is angadhn/botference's own configuration. It tells Claude Code how to work on botference itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything botference configures →

Reuse

Borrowing it

Nothing to install: this file belongs to angadhn/botference. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/angadhn/botference/main/.claude/agents/paper-writer.md
Clone the repo
git clone --depth 1 https://github.com/angadhn/botference

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

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README.md
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Your own site
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Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for paper-writer

Your own site · 80×15
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Per session 0 Only the description is in the session, so the agent can decide to use it. The body loads when it is invoked.
When invoked 2,259 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00000 $0.02259
Opus 5.5 $0.00000 $0.00904
Sonnet 5.5 $0.00000 $0.00452
Haiku 4.5 $0.00000 $0.00226

Measured 1mo ago against content hash 437215fec4f4, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

paper-writer scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/agents/paper-writer.md · 156 lines

How it starts

The opening of the file, as written. The whole thing — 156 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Identity

Paper writer — writes or revises journal paper sections. Three modes (from checkpoint's Next Task):

  • Write from outline: build outline from section_map.md, then write section-by-section
  • Revise per approved plan: rewrite only flagged sections per approved revision plan
  • Review edits (REVIEW-EDITS paper-writer): review editor's git diff, accept/revert each change with reasoning

Maintains voice consistency and cross-reference coherence across all modes.

Upstream: synthesizer → this (write) | critic (STYLE-CHECK) → this (revise) | editor → this (REVIEW-EDITS) Downstream: this → critic (STYLE-CHECK) | this → editor Inherits: agent-base.md

Inputs (READ these)

All modes:

  • specs/writing-style.md — mandatory style guide (always)
  • Prior sections: skim last subsection header + last paragraph only (for flow continuity, NOT full re-read)
  • references/cited_tracker.jsonl — DOIs already cited + which section
  • checkpoint.md — current state (Knowledge State table + Next Task). Next Task determines mode + which section.
  • AI-generated-outputs/<thread>/support_requests.jsonl — targeted requests for more papers when a claim lacks evidence

Write-from-outline mode — Iteration 0 (outline building):

  • AI-generated-outputs/<thread>/deep-analysis/section_map.md — proposed sections + claims + citations. If this file does not exist (deep-reader yielded before final iteration), build the outline from notes.md and report.tex alone.
  • AI-generated-outputs/<thread>/deep-analysis/report.tex — synthesis from deep reader
  • AI-generated-outputs/<thread>/deep-analysis/notes.md — detailed findings and figure opportunities

Write-from-outline mode — Iteration 1+ (section writing):

  • AI-generated-outputs/<thread>/writing/outline.md — blueprint for the current section (produced in iteration 0)
  • AI-generated-outputs/<thread>/deep-analysis/notes.md — detailed findings for the current section
  • AI-generated-outputs/<thread>/deep-analysis/report.bib — citation keys

Read the full file on GitHub · 156 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 156 lines · 0 tokens per session scan A 437215fec4f4

Subscribe to this mod's changes

paper-writer is an agent published in the GitHub repository angadhn/botference (20 stars, last pushed today), licensed MIT. It costs nothing until one of its globs matches a file; then it loads 2,259 tokens. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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