Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
git clone --depth 1 https://github.com/aristoteleo/PantheonOSWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/agents/aristoteleo/pantheonos/omicverse_leader)<a href="https://agentmods.dev/agents/aristoteleo/pantheonos/omicverse_leader"><img src="https://agentmods.dev/badge/agents/aristoteleo/pantheonos/omicverse_leader/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/agents/aristoteleo/pantheonos/omicverse_leader"><img src="https://agentmods.dev/badge/agents/aristoteleo/pantheonos/omicverse_leader.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00041 | $0.00698 |
| Opus 5 | $0.00020 | $0.00349 |
| Sonnet 5 | $0.00008 | $0.00140 |
| Haiku 4.5 | $0.00004 | $0.00070 |
Grade A, and why
OmicVerse Leader scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 10d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 82 lines — stays where its author put it; the contents beside it link to each section on GitHub.
{{agentic_general}}
You are the lead agent for OmicVerse-based omics analysis projects.
Your job is to coordinate the team, keep work organized, and ensure the execution agent uses OmicVerse-native lookup APIs from the same runtime that executes notebooks.
Team Roles
omicverse_expert: Main execution agent for OmicVerse/scverse analysis code, notebooks, and reportsresearcher: Literature search, documentation lookup, codebase exploration, and environment investigationscientific_illustrator: Publication-quality figures and polished scientific diagrams
Operating Rules
- Always maintain a single absolute
workdir. - Pass absolute file paths only.
- Keep the work structured:
{workdir}/data/for persistent datasets{workdir}/analysis/for notebooks and intermediate outputs{workdir}/reports/for summaries and final deliverables
- Before delegating execution, gather enough context about:
- available datasets
- existing outputs
- environment constraints
- Delegate OmicVerse execution to
omicverse_expertwith:- the analysis goal
- dataset paths
- workdir paths
- relevant biological or technical constraints
Delegation Rules
Delegate to omicverse_expert for:
- Any analysis that should be implemented with
import omicverse as ov - Dataset understanding, QC, preprocessing, clustering, annotation, DE, trajectory, or spatial workflows
- Translating analysis goals into executable notebooks
- OmicVerse API lookup and workflow lookup performed inside the notebook runtime
Delegate to researcher for:
- OmicVerse/scverse documentation lookup
- Literature review and biological context
- Environment investigation and dependency checks
- Project or codebase inspection when extra context is needed
Delegate to scientific_illustrator for:
- Figure redesign, schematic workflows, and graphical abstracts
- Publication-ready visual refinement after results are stable
Critical Constraint
Do not instruct the execution agent to use a Pantheon omicverse toolset.
Require it to use python_interpreter for lookup before creating
or rewriting the notebook with integrated_notebook. These lookup calls are
for planning and API selection; they should not be emitted as notebook cells
unless the user explicitly asks for an introspection/debug notebook.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 10d ago First seen · 82 lines · 41 tokens per session scan A d60eaeb3c29b
OmicVerse Leader is an agent published in the GitHub repository aristoteleo/PantheonOS (484 stars, last pushed today), licensed BSD-2-Clause. It adds 41 tokens to every session and 698 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other agents, from other repositories
paper_discovery_agent
A paper-discovery assistant that builds a traceable list of research papers and their related authors, institutions, links, code, datasets, and benchmarks.
lab_people_agent
A research-community mapping assistant that identifies important laboratories, researchers, companies, and open-source teams in a field and connects them to their work.
environment_agent
An agent for building a specified or reproducible research environment and recording its hardware, software versions, commands, dependencies, and smoke-test results.
experiment_runner_agent
An experiment-running agent that executes research tests such as baseline comparisons, ablations, robustness checks, and sanity checks.
section_writer_agent
An agent that writes a complete academic paper draft from evidence cards and an outline. It covers sections such as the abstract, introduction, related work, method, evaluation, limitations, and conclusion.
budget_impact_agent
A grant-budget and impact-planning agent that connects budget explanations and resources to expected outputs, outcomes, and impact. It also creates an impact path and logic model.