A preflight report for the DeepInit project-analysis tool. It checks available developer tools, project scope, configuration, enabled issue categories, and estimated analysis cost without using language-model tokens or changing files.

Use it to inspect detected tools, database and Git availability, resolved settings, configuration validity, enabled checks, and whether freshness hooks can be installed.

It shows whether the planned analysis has the tools and valid settings it needs before you run it. It also exposes missing tools and configuration problems early.

doctor — Command for Claude Code by deepfusionlabs/deep-init

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo

git clone --depth 1 https://github.com/deepfusionlabs/deep-init

Made for: Claude Code.

Or install deep-init, the plugin that ships this one along with the rest of its 1 skill, 9 commands, 2 hooks.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

README.md

[![agentmods](https://agentmods.dev/badge/commands/deepfusionlabs/deep-init/doctor/github.svg)](https://agentmods.dev/commands/deepfusionlabs/deep-init/doctor)

Your own site

<a href="https://agentmods.dev/commands/deepfusionlabs/deep-init/doctor"><img src="https://agentmods.dev/badge/commands/deepfusionlabs/deep-init/doctor/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

Your own site · 80×15

<a href="https://agentmods.dev/commands/deepfusionlabs/deep-init/doctor"><img src="https://agentmods.dev/badge/commands/deepfusionlabs/deep-init/doctor.svg" alt="Reviewed on agentmods" width="80" height="20"></a>

Per session 39 Only the description is in the session, so the agent can decide to use it. The body loads when it is invoked.

When invoked 531 The whole file, excluding the scripts and references it only reads on demand.

Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.

Origin original No closer match found in the catalogue.

Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

Model	Per session	Once invoked
Fable 5.1	$0.00039	$0.00531
Opus 5.5	$0.00016	$0.00212
Sonnet 5.5	$0.00008	$0.00106
Haiku 4.5	$0.00004	$0.00053

Measured 2mo ago against content hash 3d2079d576c7, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

doctor scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

commands/doctor.md · 17 lines

What it actually says

Run the deep-init skill's preflight report (--doctor) — 0 tokens, no LLM, no analysis, no writes. Load skills/deep-init/SKILL.md and report:

Version & freshness — read .claude-plugin/plugin.json for the on-disk version; for the version actually loaded in this session (and a stale-reload check) run /deep-init:version. Claude Code loads plugin markdown once per session, so activation is host-dependent: in a plain terminal a new session (or /reload-plugins) picks it up; inside the VS Code/JetBrains extension you must restart the IDE itself — Developer: Reload Window does not reload the plugin host.
Tools detected — scc, Graphify, ctags, a DB client, gitleaks/trufflehog (and what each falls back to if missing — nothing aborts a run).
Scope — the component registry, whether a DB / git history is present and in scope.
Resolved settings — the effective config (built-in max-quality defaults ← .ai/deepinit.config ← any flags), and whether .ai/deepinit.config is valid against skills/deep-init/assets/deepinit.config.schema.json (report unknown/invalid keys — warn, never fatal, R8).
Enabled issue families and the estimated cost (base + issue-pass terms).
Freshness nudge — would it fire now? Run deepinit_status.py --explain (0 tokens, no LLM) and show its verdict: docs stale or fresh, whether the SessionStart nudge is enabled or disabled (and by which switch), the cadence/window, the last-nudge state, and any active [Not now] decline-snooze. This answers "why am I not seeing the staleness nudge?" without guesswork.

Then OFFER (do not auto-run) to install the freshness triggers via setup-hooks — the deepinit_status.py keystone + the post-commit + SessionStart hooks (references/triggers.md) — and point to /deep-init:customize → Freshness to change the cadence / window or turn the nudge off. Make no changes.

$ARGUMENTS

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

2mo ago First seen · 17 lines · 39 tokens per session scan A 3d2079d576c7

Subscribe to this mod's changes

doctor is a command published in the GitHub repository deepfusionlabs/deep-init (6 stars, last pushed 1mo ago), licensed MIT. It adds 39 tokens to every session and 531 once invoked, about $0.0002 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

Claude Code agents-md ai-coding-agents ast claude-code-plugin claude-md

doctor next to 6 commands from other repositories
Mod	Type	Stars	Last push	Licence	Scan	Tokens	Works with
doctordeepfusionlabs/deep-init	Command	6	1mo ago	MIT	A	39	Claude Code
fleet-conformancesjarmak/coding-agent-workflows	Command	7	12d ago	MIT	A	37	Claude Code
feedbackch015/code-pentester	Command	4	19d ago	MIT	A	21	Claude Code
vach015/code-pentester	Command	4	19d ago	MIT	A	21	Claude Code
compliancech015/code-pentester	Command	4	19d ago	MIT	A	32	Claude Code
pentestch015/code-pentester	Command	4	19d ago	MIT	A	27	Claude Code
runch015/code-pentester	Command	4	19d ago	MIT	A	33	Claude Code