Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add commands/deepfusionlabs/deep-init/doctorgit clone --depth 1 https://github.com/deepfusionlabs/deep-initWhat it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00039 | $0.00531 |
| Opus 5 | $0.00019 | $0.00266 |
| Sonnet 5 | $0.00008 | $0.00106 |
| Haiku 4.5 | $0.00004 | $0.00053 |
Grade A, and why
doctor scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
What it actually says
Run the deep-init skill's preflight report (--doctor) — 0 tokens, no LLM, no analysis, no writes. Load skills/deep-init/SKILL.md and report:
- Version & freshness — read
.claude-plugin/plugin.jsonfor the on-disk version; for the version actually loaded in this session (and a stale-reload check) run/deep-init:version. Claude Code loads plugin markdown once per session, so activation is host-dependent: in a plain terminal a new session (or/reload-plugins) picks it up; inside the VS Code/JetBrains extension you must restart the IDE itself —Developer: Reload Windowdoes not reload the plugin host. - Tools detected — scc, Graphify, ctags, a DB client, gitleaks/trufflehog (and what each falls back to if missing — nothing aborts a run).
- Scope — the component registry, whether a DB / git history is present and in scope.
- Resolved settings — the effective config (built-in max-quality defaults ←
.ai/deepinit.config← any flags), and whether.ai/deepinit.configis valid againstskills/deep-init/assets/deepinit.config.schema.json(report unknown/invalid keys — warn, never fatal, R8). - Enabled issue families and the estimated cost (base + issue-pass terms).
- Freshness nudge — would it fire now? Run
deepinit_status.py --explain(0 tokens, no LLM) and show its verdict: docs stale or fresh, whether the SessionStart nudge is enabled or disabled (and by which switch), the cadence/window, the last-nudge state, and any active [Not now] decline-snooze. This answers "why am I not seeing the staleness nudge?" without guesswork.
Then OFFER (do not auto-run) to install the freshness triggers via setup-hooks — the deepinit_status.py keystone + the post-commit + SessionStart hooks (references/triggers.md) — and point to /deep-init:customize → Freshness to change the cadence / window or turn the nudge off. Make no changes.
$ARGUMENTS
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 2d ago First seen · 17 lines · 39 tokens per session scan A 3d2079d576c7
doctor is a command published in the GitHub repository deepfusionlabs/deep-init (6 stars, last pushed 14d ago), licensed MIT. It adds 39 tokens to every session and 531 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
Other commands, from other repositories
claude-md-migrate
Rewrite a bloated or stale CLAUDE.md into a lean, verified "map, not wishes" file — nothing invented, hard rules preserved verbatim.
fleet-conformance
Scan every repo on the machine for guardrails, testing, and observability conformance; audit the deltas semantically; produce a fleet report; and propose canary-first remediation.
claude-md-new
Scaffold a CLAUDE.md for this repo from battle-tested templates, filled in with the project's real commands.
implement-review
One agent implements a task, then reviews its own work behind a hard verification gate before finalizing.
claude-md-audit
Grade this repo's CLAUDE.md / AGENTS.md (0–100) and return a worst-first fix list.
project-init
Stand up the context layers for a project — a thin pointer-style AGENTS.md plus seed compass maps — without touching the memory layer.