A command that classifies a biomedical request and chooses the smallest sequence of tools needed to handle it. It also lists required inputs, dependencies, confidence, and the first tool call.

Use it at the start of requests involving areas such as genes, medicines, proteins, medical images, scientific papers, or isolated code execution.

It prevents unnecessary tool use and makes the intended research route and missing information clear before work begins.

How omar-A-hassan/medsci-agent configures Claude Code and OpenCode

Reuse

Borrowing it

Nothing to install: this file belongs to omar-A-hassan/medsci-agent. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file

curl -O https://raw.githubusercontent.com/omar-A-hassan/medsci-agent/main/.opencode/commands/triage.md

Clone the repo

git clone --depth 1 https://github.com/omar-A-hassan/medsci-agent

Made for: Claude Code, OpenCode.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

README.md

[![agentmods](https://agentmods.dev/badge/commands/omar-a-hassan/medsci-agent/triage/github.svg)](https://agentmods.dev/commands/omar-a-hassan/medsci-agent/triage)

Your own site

<a href="https://agentmods.dev/commands/omar-a-hassan/medsci-agent/triage"><img src="https://agentmods.dev/badge/commands/omar-a-hassan/medsci-agent/triage/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

Your own site · 80×15

<a href="https://agentmods.dev/commands/omar-a-hassan/medsci-agent/triage"><img src="https://agentmods.dev/badge/commands/omar-a-hassan/medsci-agent/triage.svg" alt="Reviewed on agentmods" width="80" height="20"></a>

Per session 12 Only the description is in the session, so the agent can decide to use it. The body loads when it is invoked.

When invoked 103 The whole file, excluding the scripts and references it only reads on demand.

Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.

Origin original No closer match found in the catalogue.

Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

Model	Per session	Once invoked
Fable 5.1	$0.00012	$0.00103
Opus 5.5	$0.00005	$0.00041
Sonnet 5.5	$0.00002	$0.00021
Haiku 4.5	$0.00001	$0.00010

Measured 2mo ago against content hash 29de46548185, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

triage scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.opencode/commands/triage.md · 15 lines

What it actually says

Triage this request and produce:

Intent classification (omics, drug, protein, imaging, literature, paperqa, sandbox)
Minimal sequential tool plan (no parallel calls)
Required inputs/data dependencies
Route confidence (high/medium/low) with one-line justification
First tool call to execute now with explicit rationale

User request: $ARGUMENTS

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

2mo ago First seen · 15 lines · 12 tokens per session scan A 29de46548185

Subscribe to this mod's changes

triage is a command published in the GitHub repository omar-A-hassan/medsci-agent (17 stars, last pushed 2mo ago), licensed MIT. It adds 12 tokens to every session and 103 once invoked, about $0.0000 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Planning Scientific agents mcp medgemma ollama opencode txgemma

triage next to 6 commands from other repositories
Mod	Type	Stars	Last push	Licence	Scan	Tokens	Works with
triageomar-A-hassan/medsci-agent	Command	17	2mo ago	MIT	A	12	Claude Code, OpenCode
planningOpenRaiser/NanoResearch	Command	1.3k	28d ago	MIT	A	0	Claude Code
analysisOpenRaiser/NanoResearch	Command	1.3k	28d ago	MIT	A	0	Claude Code
astro-dso-docjjmartres/ai-coding-agents	Command	48	15d ago	MIT	A	16	Claude Code
leakage-checkyeaight7/agent-powerups	Command	8	1mo ago	Apache-2.0	A	10	Claude Code
ml-run-reviewyeaight7/agent-powerups	Command	8	1mo ago	Apache-2.0	A	0	Claude Code
checklistgithub/spec-kit	Command	148k	yesterday	MIT	A	13	Claude Code

medsci-agent: Command for Claude Code