Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add instructions/dna-seq/just-dna-lite/agents-mdgit clone --depth 1 https://github.com/dna-seq/just-dna-liteWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/instructions/dna-seq/just-dna-lite/agents-md)<a href="https://agentmods.dev/instructions/dna-seq/just-dna-lite/agents-md"><img src="https://agentmods.dev/badge/instructions/dna-seq/just-dna-lite/agents-md.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.19032 | $0.19032 |
| Opus 5 | $0.09516 | $0.09516 |
| Sonnet 5 | $0.03806 | $0.03806 |
| Haiku 4.5 | $0.01903 | $0.01903 |
Grade A, and why
just-dna-lite AGENTS.md scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
The source is not reproduced here
Licensed AGPL-3.0
The repository is licensed AGPL-3.0, which this catalogue does not treat as permission to reproduce the file. Read it at the source.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 5d ago First seen · 1,308 lines · 19,032 tokens per session scan A 3df400f138e2
just-dna-lite AGENTS.md is an instructions file published in the GitHub repository dna-seq/just-dna-lite (138 stars, last pushed 5d ago), licensed AGPL-3.0. It adds 19,032 tokens to every session, about $0.0952 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other instructions, from other repositories
viral-ngs AGENTS.md
AGENTS.md instructions for broadinstitute/viral-ngs, covering agents.md, development environment, docker-centric development, development workflow and running tests.
viral-ngs copilot-instructions.md
Copilot instructions for broadinstitute/viral-ngs, covering copilot instructions, quick reference, running tests and key files.
mosaicatcher-pipeline CLAUDE.md
Claude Code instructions for friendsofstrandseq/mosaicatcher-pipeline, covering claude.md, project overview, version management, common commands and using pixi (recommended for snakemake v9+).
AI4L CLAUDE.md
Claude Code instructions for forever-healthy/AI4L, covering project instructions, session related, glossary, timestamps and globals for skills and @agents.
tula CLAUDE.md
Instructions for realactivity/tula, covering claude.md - claude code notes, claude code and quick links.
clingen-link CLAUDE.md
Claude Code instructions for berntpopp/clingen-link, a project described as: MCP server for ClinGen (Clinical Genome Resource): gene–disease validity, dosage sensitivity, clinical actionability, and expert-panel variant pathogenicity (ERepo) — as typed tools for LLM agents.