3 tagged snakemake, measured the same way as everything else here.
Instructions file
Instructions for crazyhottommy/pyflow-ChIPseq, covering pyflow-chipseq: repository structure and overview, repository purpose, key features, publication and directory structure.
friendsofstrandseq/mosaicatcher-pipeline
Instructions file
Claude Code instructions for friendsofstrandseq/mosaicatcher-pipeline, covering claude.md, project overview, version management, common commands and using pixi (recommended for snakemake v9+).
friendsofstrandseq/mosaicatcher-pipeline
Instructions file Gemini CLI
Gemini CLI instructions for friendsofstrandseq/mosaicatcher-pipeline, covering claude.md, project overview, version management, common commands and using pixi (recommended for snakemake v9+).