Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
git clone --depth 1 https://github.com/helena-bioinformatics/noodle-mcpWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/mcp/helena-bioinformatics/noodle-mcp/noodle)<a href="https://agentmods.dev/mcp/helena-bioinformatics/noodle-mcp/noodle"><img src="https://agentmods.dev/badge/mcp/helena-bioinformatics/noodle-mcp/noodle/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/mcp/helena-bioinformatics/noodle-mcp/noodle"><img src="https://agentmods.dev/badge/mcp/helena-bioinformatics/noodle-mcp/noodle.svg" alt="Reviewed on agentmods" width="80" height="20"></a>Grade A, and why
noodle scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
This is a copy
88% identical to noodle — 3 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.
What it actually says
{
"noodle": {
"url": "https://api.helena.bio/noodle/v1/mcp",
"type": "streamable-http"
}
}What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 11d ago First seen · 6 lines scan A c0a110a6aefd
noodle is an MCP server published in the GitHub repository helena-bioinformatics/noodle-mcp (0 stars, last pushed 11d ago), licensed Apache-2.0. Its token cost is not measured: an MCP server costs its tool schemas, not its config file. A static security scan graded it A with 0 findings. It is 88% identical to noodle, differing in 3 lines, and is treated as a copy.
Other mcp servers, from other repositories
pubmed-mcp-server
Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms. Runs locally from the @cyanheads/pubmed-mcp-server npm package. Needs 4 environment variables to run.
patent-literature-search-mcp
Search 200M+ patents and 216M+ scientific papers using natural language and structured filters. Remote server at connect.patsnap.com.
pubcrawl
PubMed & Europe PMC literature search, US/UK drug labelling, and clinical trials for AI assistants. Runs locally from the @pharmatools/pubcrawl npm package. Needs 1 environment variable to run.
protein-mcp-server
MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt. Runs locally from the protein-mcp-server npm package. Needs 1 environment variable to run.
pubchem-mcp-server
Search PubChem compounds, properties, safety data, bioactivity, and cross-references. Runs locally from the @cyanheads/pubchem-mcp-server npm package. Needs 1 environment variable to run.
openfda-mcp-server
Query FDA data on drugs, food, devices, and recalls via openFDA. STDIO or Streamable HTTP. Runs locally from the @cyanheads/openfda-mcp-server npm package. Needs 8 environment variables to run.