45 tagged bioinformatics, measured the same way as everything else here.
Browse within: model-context-protocol 20agentic-ai 19multiomics 19precision-medicine 19transcriptomics 19genomics 11llm-tools 9drug-discovery 6fastmcp 6mcp-server 6clinvar 5
AlterLab-IEU/AlterLab-Academic-Skills
MCP server Claude CodeCodexCursor +2
The fast, Pythonic way to build MCP servers and clients. Runs locally from the fastmcp Python package.
MCP server Claude CodeCodexCursor +2
ChatSpatial: Natural language-driven spatial transcriptomics analysis via Model Context Protocol (MCP) integration. Runs locally from the chatspatial Python package.
MCP server Claude CodeCodexCursor +2
MCP server for Open Targets Platform biomedical data access. Runs locally from the opentargets-mcp Python package.
MCP server Claude CodeCodexCursor +2
Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools. Runs locally from the biomcp npm package. Needs 8 environment variables to run.
MCP server Claude CodeCodexCursor +2
Plant genomics MCP — 56 tools across 23 live backends (Ensembl Plants, Phytozome, UniProt, Europe PMC, QuickGO, Planteome, PlantCyc/PMN, g:Profiler, AlphaFold, PDBe, InterPro, JASPAR, ThaleMine, PANTHER, OrthoDB, AraGWAS, 1001 Genomes, BLAST, Gramene, KEGG, STRING, ATTED-II, BAR) for MCP clients. Runs locally from the…
MCP server Claude CodeCodexCursor +2
MCP gateway federating 22 biomedical MCP servers behind one endpoint: gnomAD, ClinVar, HPO, VEP. Remote server at genefoundry.org.
smaniches/alphafold-sovereign-mcp
MCP server Claude CodeCodexCursor +2
MCP server wrapping AlphaFold DB and 8 other biomedical data sources, with a local SQLite knowledge graph. Runs locally from the alphafold-sovereign-mcp Python package.
MCP server Claude CodeCodexCursor +2
Research-data acquisition MCP — find and fetch datasets across archives, omics registries, and literature. Runs locally from the data-aggregator-mcp Python package. Needs 12 environment variables to run.
MCP server Claude CodeCodexCursor +2
Verifiable, release-aware protein evidence workflows over UniProt and linked scientific sources. Runs locally from the uniprot-mcp-server Python package.
MCP server Claude CodeCodexCursor +2
Model Context Protocol server that drives a local GROMACS installation — build, solvate, ionize, run simulations in the background, and analyse trajectories from any MCP client. Runs locally from the gromacs-mcp Python package.
MCP server Claude CodeCodexCursor +2
Run reproducible bioinformatics pipelines from an AI assistant over MCP, with verifiable provenance. Runs locally from the flowproof-mcp Python package.
MCP server Claude CodeCodexCursor +2
Explain why two scientific papers disagree, every claim grounded in a verbatim source quote. Runs locally from the studydiff-mcp npm package. Needs 2 environment variables to run.
SachinGawande2003/Heuris-BioMCP
MCP server Claude CodeCodexCursor +2
MCP servers for bioinformatics. Runs locally from the biomcp Python package.
MCP server Claude CodeCodexCursor +2
MCP server "mgi-link" as configured in berntpopp/mgi-link. Runs locally from the mgi-link Python package.
MCP server Claude CodeCodexCursor +2
MCP server "hpo-link" as configured in berntpopp/hpo-link. Runs locally from the hpo-link Python package.
MCP server Claude CodeCodexCursor +2
MCP server for the Scigantic catalog of public scientific data archives, with LLM-ready schema cards. Runs locally from the scigantic-mcp Python package.
MCP server Claude CodeCodexCursor +2
Auditable MCP server for PubMed, Europe PMC, ClinicalTrials.gov, and bioRxiv/medRxiv queries. Remote server at srikarjy025-biolab-mcp.hf.space.
MCP server Claude CodeCodexCursor +2
A sovereign, local-first MCP server for High-Throughput Screening (HTS) assay calculations across Sub-Cellular, Cellular, Tissue, and Organism biological segments. Runs locally from the seosiri-bioassay-mcp Python package.
MCP server Claude CodeCodexCursor +2
Community MCP server for the CZ CELLxGENE Discover Census single-cell atlas. Ontology-aware, provenance-tracked, unaffiliated with CZI. Runs locally from the cxg-census-mcp Python package.
MCP server Claude CodeCodexCursor +2
MCP server for phylogenetic inference — never returns a topology without its support. Runs locally from the phylokit-mcp Python package. Needs 2 environment variables to run.
MCP server Claude CodeCodexCursor +2
MCP server exposing PlantCV as a measurement instrument — traits plus the segmentation overlay they came from. Runs locally from the plantcv-mcp Python package.
MCP server Claude CodeCodexCursor +2
Pre-clinical drug discovery intelligence — 12 MCP tools for drug targets: profiles, compounds, patents, papers, structures, competitive landscape, pathways, validation, clinical pipeline, and synthetic-lethal whitespace. Runs locally from the mosaic-mcp Python package. Needs 3 environment variables to run.
MCP server Claude CodeCodexCursor +2
MCP server "uniprot-link" as configured in berntpopp/uniprot-link. Runs locally from the uniprot-link Python package.
MCP server Claude CodeCodexCursor +2
MCP server "metadome-link" as configured in berntpopp/metadome-link. Runs locally from the metadome-link Python package.