Open-source AI research assistant for VS Code + GitHub Copilot. Connects to PubMed, OpenAlex, Semantic Scholar, Europe PMC, CrossRef, and Zotero via MCP servers. Custom agents guide systematic reviews, academic writing, data analysis, and project management — all ICMJE-compliant with full audit trails.
This repository also configures its own agents. See what research-workflow-assistant tells them →
Intersect-Collaborations-LLC/research-workflow-assistant
MCP server Claude CodeCodexCursor +2
One of 12 in mcp.json
MCP server "pubmed" as configured in Intersect-Collaborations-LLC/research-workflow-assistant. Runs pubmed_server with ${workspaceFolder}/.venv/Scripts/python.
Intersect-Collaborations-LLC/research-workflow-assistant
MCP server Claude CodeCodexCursor +2
One of 12 in mcp.json
MCP server "openalex" as configured in Intersect-Collaborations-LLC/research-workflow-assistant. Runs openalex_server with ${workspaceFolder}/.venv/Scripts/python.
Intersect-Collaborations-LLC/research-workflow-assistant
MCP server Claude CodeCodexCursor +2
One of 12 in mcp.json
MCP server "semantic-scholar" as configured in Intersect-Collaborations-LLC/research-workflow-assistant. Runs semantic_scholar_server with ${workspaceFolder}/.venv/Scripts/python.
Intersect-Collaborations-LLC/research-workflow-assistant
MCP server Claude CodeCodexCursor +2
One of 12 in mcp.json
MCP server "europe-pmc" as configured in Intersect-Collaborations-LLC/research-workflow-assistant. Runs europe_pmc_server with ${workspaceFolder}/.venv/Scripts/python.
Intersect-Collaborations-LLC/research-workflow-assistant
MCP server Claude CodeCodexCursor +2
One of 12 in mcp.json
MCP server "crossref" as configured in Intersect-Collaborations-LLC/research-workflow-assistant. Runs crossref_server with ${workspaceFolder}/.venv/Scripts/python.
Intersect-Collaborations-LLC/research-workflow-assistant
MCP server Claude CodeCodexCursor +2
One of 12 in mcp.json
MCP server "zotero" as configured in Intersect-Collaborations-LLC/research-workflow-assistant. Runs zotero_server with ${workspaceFolder}/.venv/Scripts/python.
Intersect-Collaborations-LLC/research-workflow-assistant
MCP server Claude CodeCodexCursor +2
One of 12 in mcp.json
MCP server "prisma-tracker" as configured in Intersect-Collaborations-LLC/research-workflow-assistant. Runs prisma_tracker with ${workspaceFolder}/.venv/Scripts/python. Needs 2 environment variables to run.
Intersect-Collaborations-LLC/research-workflow-assistant
MCP server Claude CodeCodexCursor +2
One of 12 in mcp.json
MCP server "project-tracker" as configured in Intersect-Collaborations-LLC/research-workflow-assistant. Runs project_tracker with ${workspaceFolder}/.venv/Scripts/python. Needs 2 environment variables to run.
Intersect-Collaborations-LLC/research-workflow-assistant
MCP server Claude CodeCodexCursor +2
One of 12 in mcp.json
MCP server "zotero-local" as configured in Intersect-Collaborations-LLC/research-workflow-assistant. Runs zotero_local_server with ${workspaceFolder}/.venv/Scripts/python.
Intersect-Collaborations-LLC/research-workflow-assistant
MCP server Claude CodeCodexCursor +2
One of 12 in mcp.json
MCP server "chat-exporter" as configured in Intersect-Collaborations-LLC/research-workflow-assistant. Runs chat_exporter with ${workspaceFolder}/.venv/Scripts/python. Needs 2 environment variables to run.
Intersect-Collaborations-LLC/research-workflow-assistant
MCP server Claude CodeCodexCursor +2
One of 12 in mcp.json
MCP server "bibliography-manager" as configured in Intersect-Collaborations-LLC/research-workflow-assistant. Runs bibliography_manager with ${workspaceFolder}/.venv/Scripts/python.
Intersect-Collaborations-LLC/research-workflow-assistant
MCP server Claude CodeCodexCursor +2
One of 12 in mcp.json
MCP server "google-workspace" as configured in Intersect-Collaborations-LLC/research-workflow-assistant. Runs google_workspace_server with ${workspaceFolder}/.venv/Scripts/python.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: