galaxy-mcp
49MCP server Claude CodeCodexCursor +2
Model Context Protocol server for Galaxy bioinformatics platform. Runs locally from the galaxy-mcp Python package. Needs 2 environment variables to run.
1,328 tagged Data and AI, measured the same way as everything else here.
Browse within: model-context-protocol 101embeddings 22local-first 22knowledge-graph 19knowledge-base 16claude-desktop 15fastmcp 15gemini 15chromadb 11agent-memory 10claude-code-plugin 10data-engineering 10hybrid-search 10lancedb 10
MCP server Claude CodeCodexCursor +2
Model Context Protocol server for Galaxy bioinformatics platform. Runs locally from the galaxy-mcp Python package. Needs 2 environment variables to run.
MCP server Claude CodeCodexCursor +2
Serve a folder of Markdown notes as an MCP server: hybrid search, reading, and sourced answers. Remote server at trip2g.com.
MCP server Claude CodeCodexCursor +2
Streaming read/write and conversion for 100+ data formats. pip install iterabledata; import iterable. Runs locally from the iterabledata Python package.
koul777/Public-Regulation-MCP-Builder
MCP server Claude CodeCodexCursor +2
MCP server "reg-rag-preprocessor" as configured in koul777/Public-Regulation-MCP-Builder. Runs locally from the reg-rag-preprocessor Python package.
MCP server Claude CodeCodexCursor +2
A code analysis and retrieval system that combines graph databases, vector search, and LLMs to understand and query codebases through natural language. Runs locally from the graphsense npm package.
MCP server Claude CodeCodexCursor +2
MCP server "rag-anything-mcp" as configured in jesse-merhi/rag-anything-mcp. Runs locally from the rag-anything-mcp Python package.
MCP server Claude CodeCodexCursor +2
MCP server with FAISS local vector database for RAG. Runs locally from the local-faiss-mcp Python package.
MCP server Claude CodeCodexCursor +2
Search and retrieve AI prompts from prompts.chat, the social platform for AI prompts. Runs locally from the @fkadev/prompts.chat-mcp npm package. Needs 2 environment variables to run.
MCP server Claude CodeCodexCursor +2
Model Context Protocol server for Google Gemini AI with chat, research, and grounding. Runs locally from the @houtini/gemini-mcp npm package. Needs 1 environment variable to run.
sanderkooger/mcp-server-ragdocs
MCP server Claude CodeCodexCursor +2
An MCP server for semantic documentation search and retrieval using vector databases to augment LLM capabilities. Runs locally from the @sanderkooger/mcp-server-ragdocs npm package.
MCP server Claude CodeCodexCursor +2
MCP server for Jina AI services. Runs locally from the jina-ai-mcp-server npm package.
MCP server Claude CodeCodexCursor +2
MCP server for RAGStack knowledge base - search, chat, upload, and scrape. Runs locally from the ragstack-mcp Python package. Needs 2 environment variables to run.
MCP server Claude CodeCodexCursor +2
MCP server "dataset-mcp" as configured in boleyn/fastgpt-dataset-mcp. Runs locally from the dataset-mcp Python package.
MCP server Claude CodeCodexCursor +2
Persistent memory for AI coding agents. Local-first SQLite + vector search, 12 MCP tools. Runs locally from the @sgx-labs/same npm package. Needs 1 environment variable to run.
MCP server Claude CodeCodexCursor +2
MCP server "docs-langchain", hosted remotely at docs.langchain.com, as configured in srtab/daiv.
MCP server Claude CodeCodexCursor +2
One of 3 in .mcp.json
MCP server "qdrant-search", hosted remotely, as configured in nick-pape/grackle.
MCP server Claude CodeCodexCursor +2
Gives the agent up-to-date documentation and code examples for libraries and frameworks, fetched on demand so answers are not stuck at the model's training cutoff. Runs locally from the @upstash/context7-mcp npm package.
MCP server Claude CodeCodexCursor +2
Mechanistic interpretability MCP server wrapping chuk-lazarus. Runs locally from the chuk-mcp-lazarus Python package.
MCP server Claude CodeCodexCursor +2
One of 3 in .mcp.json
CLI-first semantic code search with MCP integration and interactive D3.js visualization for exploring code relationships. Runs locally from the mcp-vector-search Python package. Needs 1 environment variable to run.
davanstrien/hub-semantic-search-mcp
MCP server Claude CodeCodexCursor +2
MCP server "hub-semantic-search-mcp" as configured in davanstrien/hub-semantic-search-mcp. Runs locally from the hub-semantic-search-mcp Python package.
MCP server Claude CodeCodexCursor +2
One of 3 in .mcp.json
MCP server "r2r" as configured in mm-weber/loremaester. Runs /workspaces/loremaester/mcp-servers/r2r-wrapper/r2r_mcp_wrapper.py with python3. Needs 1 environment variable to run.
AgentSafe-AI/tooltrust-scanner
MCP server Claude CodeCodexCursor +2
Scans MCP servers for prompt injection, data exfiltration, and privilege escalation. Runs locally from the tooltrust-mcp npm package.
MCP server Claude CodeCodexCursor +2
MCP server for AI-powered codebase indexing with auto-save checkpoints, incremental updates, real-time progress tracking, and index verification tools. Runs locally from the @ngotaico/mcp-codebase-index npm package.
MCP server Claude CodeCodexCursor +2
AI-powered prompt engineering CLI tool. Runs locally from the promptheus Python package. Needs 8 environment variables to run.