Scientific MCP servers

1,371 tagged Scientific, measured the same way as everything else here.

Browse within: mcp-server 350model-context-protocol 299pipeworx 189bioinformatics 59LLM 45agentic-ai 30ai-tools 26fastmcp 24llm-tools 23cyanheads 19arxiv 18climate 15healthcare 15fastapi 14

apple-health-mcp

241

smarzola/apple-health-mcp

MCP server Claude CodeCodexCursor +2

MCP server that lets LLMs query your Apple Health export via SQL. Runs locally from the apple-health-mcp Python package.

not rated 3 4mo ago A tokens not measured original MIT

nexonco-mcp

242

1sustgmboab/nexonco-mcp

MCP server Claude CodeCodexCursor +2

An advanced MCP Server for accessing and analyzing clinical evidence data, with flexible search options to support precision medicine and oncology research. Runs locally from the nexonco-mcp Python package.

not rated 3 12d ago A tokens not measured original MIT

gtex-server

243

Augmented-Nature/GTEx-MCP-Server

MCP server Claude CodeCodexCursor +2

MCP server "gtex-server" as configured in Augmented-Nature/GTEx-MCP-Server. Runs locally from the gtex-server npm package.

not rated 3 10mo ago A tokens not measured

medical-mcp

244

ThrownLemon/medical-mcp

MCP server Claude CodeCodexCursor +2

A Model Context Protocol (MCP) server that provides comprehensive medical information by querying multiple authoritative medical APIs including FDA, WHO, PubMed, and RxNorm. Runs locally from the medical-mcp npm package.

not rated 3 1y ago A tokens not measured original MIT archived

usgs-water-mcp

245

pgiffy/usgs-water-mcp

MCP server Claude CodeCodexCursor +2

MCP server "usgs-water-mcp" as configured in pgiffy/usgs-water-mcp. Runs locally from the usgs-water-mcp Python package.

not rated 3 1y ago A tokens not measured

thinkitpossible/CalcMCP

MCP server Claude CodeCodexCursor +2

MCP server "scientific-calculator-mcp" as configured in thinkitpossible/CalcMCP. Runs locally from the scientific-calculator-mcp Python package.

not rated 3 10mo ago A tokens not measured original MIT

biopython-mcp

247

kmaneesh/biopython-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol server providing BioPython library capabilities for biological sequence analysis, alignment, database access, and structural bioinformatics. Runs locally from the biopython-mcp Python package.

not rated 3 9mo ago A tokens not measured original MIT

arxiv-mcp-server

248

freyzo/arxiv-deep-research

MCP server Claude CodeCodexCursor +2

A flexible arXiv search and analysis service with MCP protocol support. Runs locally from the arxiv-mcp-server Python package.

not rated 3 6mo ago A tokens not measured

ema-mcp-server

249

openpharma-org/ema-mcp

MCP server Claude CodeCodexCursor +2

MCP server "ema-mcp-server" as configured in openpharma-org/ema-mcp. Runs locally from the @openpharma-org/ema-mcp-server npm package.

not rated 3 9mo ago A tokens not measured original MIT

arxiv-search-mcp

250

markmcd/arxiv-search-mcp

MCP server Claude CodeCodexCursor +2

Simple MCP server for searching arXiv. Runs locally from the arxiv-search-mcp Python package.

not rated 3 1y ago A tokens not measured original Apache-2.0

pynastran-mcp

251

Shaoqigit/pynastran-mcp

MCP server Claude CodeCodexCursor +2

MCP server "pynastran-mcp" as configured in Shaoqigit/pynastran-mcp. Runs locally from the pynastran-mcp Python package.

not rated 3 7mo ago A tokens not measured original MIT

z3-solver-mcp-server

252

dsouflis/z3-solver-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "z3-solver-mcp-server" as configured in dsouflis/z3-solver-mcp-server. Runs locally from the z3-solver-mcp-server Python package.

not rated 3 1y ago A tokens not measured

chimerax

253

mahynotch/chimerax-mcp

MCP server Claude CodeCodexCursor +2

MCP server "chimerax" as configured in mahynotch/chimerax-mcp. Runs chimerax_mcp with python.

not rated 3 6mo ago A tokens not measured original MIT

clinicaltrials-mcp

254

agents100x/clinicaltrials-mcp

MCP server Claude CodeCodexCursor +2

Conversational access to ClinicalTrials.gov — an MCP server for pharma analysts, CRO teams, and health-tech builders. Runs locally from the clinicaltrials-mcp Python package.

not rated 3 5mo ago A tokens not measured original MIT

protein_structure

255

soffelcopter/protein_structure_MCP_server

MCP server Claude CodeCodexCursor +2

MCP server "proteinstructure" as configured in soffelcopter/proteinstructureMCPserver. Runs locally from the protein_structure Python package.

not rated 3 1y ago A tokens not measured original MIT

simubridge

256

naaomiur/simubridge-skills

MCP server Claude CodeCodexCursor +2

MCP server "simubridge" as configured in naaomiur/simubridge-skills. Runs simubridge with python.

not rated 3 4mo ago A tokens not measured original MIT

shewhart-mcp

257

bertanucar/shewhart-mcp

MCP server Claude CodeCodexCursor +2

MCP server exposing shewhart's statistical process control analyses as tools for AI agents. Runs locally from the shewhart-mcp Python package.

not rated 3 4mo ago A tokens not measured

unesco-mcp

258

lpicci96/unesco-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol (MCP) server for UNESCO UIS data. Runs locally from the unesco-mcp Python package.

not rated 3 5mo ago A tokens not measured original MIT

pce

259

Bluezeamer/PrecisionContextEngine

MCP server Claude CodeCodexCursor +2

Polynomial Chaos Expansion method. Runs locally from the pce Python package.

not rated 3 6mo ago A tokens not measured GPL-3.0

precision-math-mcp

260

nerdo/precision-math-mcp

MCP server Claude CodeCodexCursor +2

MCP server providing precise mathematical computation via math.js. Runs locally from the @nerdo/precision-math-mcp npm package.

not rated 3 8mo ago A tokens not measured original MIT

spedas-agent-kit

261

spedas/spedas_agent_kit

MCP server Claude CodeCodexCursor +2

MCP server "spedas-agent-kit" as configured in spedas/spedasagentkit. Runs locally from the spedas-agent-kit Python package. Needs 5 environment variables to run.

not rated 3 2mo ago A tokens not measured original MIT archived

astronomy-oracle

262

gregario/astronomy-oracle

MCP server Claude CodeCodexCursor +2

Astronomical catalog data and observing session planner. 13,000+ objects from OpenNGC. Runs locally from the astronomy-oracle npm package.

not rated 3 24d ago A tokens not measured original MIT

weather

263

trilogy-group/youtube-summarizer-mcp

MCP server Claude CodeCodexCursor +2

PyWeather branch; bindings for Davis Vantage Pro and Pro2 weather stations, upload of weather data (e.g. wunderground.com), and meteorological calculation/conversion functions. Runs locally from the weather Python package.

not rated 3 10mo ago A tokens not measured

arxiv-mcp-server

264

lecigarevolant/arxiv-mcp-server-gpt

MCP server Claude CodeCodexCursor +2

A flexible arXiv search and analysis service with MCP protocol support. Runs locally from the arxiv-mcp-server Python package.

not rated 3 1y ago A tokens not measured original MIT