Scientific MCP servers

1,351 tagged Scientific, measured the same way as everything else here.

Browse within: model-context-protocol 288pipeworx 189bioinformatics 56ai-tools 24fastmcp 23llm-tools 22cyanheads 21arxiv 18climate 15healthcare 15fastapi 13noaa 13health 12multiomics 12

lean-lsp

25

Stavan-Jain/QECLean

MCP server Claude CodeCodexCursor +2

Lean Theorem Prover MCP. Runs locally from the lean-lsp-mcp Python package.

not rated 40 2d ago A tokens not measured original Apache-2.0

Qiskit/mcp-servers

MCP server Claude CodeCodexCursor +2

One of 6 in server.json

MCP server for the Qiskit Code Assistant. Runs locally from the qiskit-code-assistant-mcp-server Python package. Needs 3 environment variables to run.

not rated 39 1mo ago A tokens not measured original Apache-2.0

literatur-mcp

27

saidsurucu/literatur-mcp

MCP server Claude CodeCodexCursor +2

MCP server "literatur-mcp" as configured in saidsurucu/literatur-mcp. Runs locally from the literatur-mcp Python package.

not rated 39 4mo ago A tokens not measured original MIT

galaxy-mcp

28

galaxyproject/galaxy-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol server for Galaxy bioinformatics platform. Runs locally from the galaxy-mcp Python package. Needs 2 environment variables to run.

not rated 38 23d ago A tokens not measured original MIT

origin-pro-mcp

29

youngminsw/Origin-Pro-MCP

MCP server Claude CodeCodexCursor +2

MCP server for controlling OriginLab Origin Pro via COM automation. Runs locally from the origin-pro-mcp Python package.

not rated 35 +2 1mo ago A tokens not measured original MIT

mma-mcp

30

siqiliu-tsinghua/mma-mcp

MCP server Claude CodeCodexCursor +2

MCP server "mma-mcp" as configured in siqiliu-tsinghua/mma-mcp. Runs locally from the mma-mcp Python package.

not rated 32 1mo ago A tokens not measured original MIT archived

aspenplus-mcp

31

brack101/AspenPlus-MCP-Server

MCP server Claude CodeCodexCursor +2

MCP server "aspenplus-mcp" as configured in brack101/AspenPlus-MCP-Server. Runs locally from the aspenplus-mcp Python package.

not rated 32 11mo ago A tokens not measured

chemlint

32

molML/ChemLint

MCP server Claude CodeCodexCursor +2

MCP server "chemlint" as configured in molML/ChemLint. Runs locally from the chemlint Python package.

not rated 31 +2 2mo ago A tokens not measured original MIT

hyades

33

apology-is-policy/hyades

MCP server Claude CodeCodexCursor +2

Render LaTeX math as pure Unicode text art for terminals, code comments, and emails. Remote server at hyades-mcp.apg.workers.dev.

not rated 30 5mo ago A tokens not measured original MPL-2.0

agrobr

34

bruno-portfolio/agrobr-mcp

MCP server Claude CodeCodexCursor +2

MCP server exposing Brazilian agricultural data via agrobr. Runs locally from the agrobr-mcp Python package.

not rated 27 +1 5mo ago A tokens not measured original MIT

netlogo

35

Razee4315/NetLogo-MCP

MCP server Claude CodeCodexCursor +2

MCP server "netlogo" as configured in Razee4315/NetLogo-MCP. Launched with netlogo-mcp. Needs 2 environment variables to run.

not rated 26 1mo ago A tokens not measured original MIT

arxiv-paper-mcp

36

yzfly/Arxiv-Paper-MCP

MCP server Claude CodeCodexCursor +2

A local search and reading service for papers on arXiv, a public website where researchers share scientific papers. It can find papers and parse their contents.

not rated 24 1y ago A tokens not measured original MIT

rowan-mcp

37

k-yenko/rowan-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol server for Rowan computational chemistry platform. Runs locally from the rowan-mcp Python package.

not rated 23 9mo ago A tokens not measured

lazarus

38

chrishayuk/chuk-mcp-lazarus

MCP server Claude CodeCodexCursor +2

Mechanistic interpretability MCP server wrapping chuk-lazarus. Runs locally from the chuk-mcp-lazarus Python package.

not rated 21 5mo ago A tokens not measured

lean-lsp-mcp

39

project-numina/lean-lsp-mcp

MCP server Claude CodeCodexCursor +2

Lean Theorem Prover MCP. Runs locally from the lean-lsp-mcp Python package.

not rated 21 5mo ago A tokens not measured original MIT

opentargets

40

nickzren/opentargets-mcp

MCP server Claude CodeCodexCursor +2

MCP server for Open Targets Platform biomedical data access. Runs locally from the opentargets-mcp Python package.

not rated 19 3mo ago A tokens not measured original MIT

jaxonomy

41

machinavitalis/jaxonomy

MCP server Claude CodeCodexCursor +2

JAX-native simulation engine for hybrid dynamical systems: block-diagram modeling, ODE/DAE solvers, events, acausal physics, and end-to-end autodiff. Runs locally from the jaxonomy Python package.

not rated 19 +1 23d ago A tokens not measured original MIT

shannon-prover

42

SkyShannonProver/shannon-prover

MCP server Claude CodeCodexCursor +2

MCP server "shannon-prover" as configured in SkyShannonProver/shannon-prover. Runs locally from the shannon-prover Python package.

not rated 19 +1 15d ago A tokens not measured

rosetta-mcp-server

43

Arielbs/rosetta-mcp-server

MCP server Claude CodeCodexCursor +2

Rosetta/PyRosetta protein modeling and Biotite translation for computational biology. Runs locally from the rosetta-mcp-server npm package. Needs 3 environment variables to run.

not rated 18 5mo ago A tokens not measured

highs-mcp

44

wspringer/highs-mcp

MCP server Claude CodeCodexCursor +2

A Model Context Protocol (MCP) server that provides linear programming (LP) and mixed-integer programming (MIP) optimization capabilities using the HiGHS solver. Runs locally from the highs-mcp npm package.

not rated 18 1y ago A tokens not measured original MIT

MaBoSS

45

marcorusc/mcp-biomodelling-servers

MCP server Claude CodeCodexCursor +2

One of 3 in server.json

MCP servers for NeKo signalling-network construction, MaBoSS Boolean simulation, and PhysiCell configuration. Runs locally from the mcp-biomodelling-servers Python package.

not rated 18 16d ago A tokens not measured

plantontology

46

AlexAI-MCP/PlantOntology

MCP server Claude CodeCodexCursor +2

MCP server "plantontology" as configured in AlexAI-MCP/PlantOntology. Runs locally from the plantontology Python package.

not rated 18 4mo ago A tokens not measured

shibuiwilliam/mcp-server-scikit-learn

MCP server Claude CodeCodexCursor +2

MCP server "mcp-server-scikit-learn" as configured in shibuiwilliam/mcp-server-scikit-learn. Runs locally from the mcp-server-scikit-learn Python package.

not rated 17 1y ago A tokens not measured original MIT

stats-compass

48

oogunbiyi21/stats-compass-mcp

MCP server Claude CodeCodexCursor +2

MCP server exposing stats-compass-core tools to LLMs like ChatGPT, Claude, and Gemini. Runs locally from the stats-compass-mcp Python package.

not rated 17 10d ago A tokens not measured original MIT

At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: