Scientific MCP servers

1,353 tagged Scientific, measured the same way as everything else here.

Browse within: mcp-server 332model-context-protocol 292pipeworx 189bioinformatics 58LLM 44agentic-ai 30ai-tools 24fastmcp 23llm-tools 22cyanheads 21arxiv 18climate 15healthcare 15fastapi 13

repro-mcp

961

ABindoff/repro-mcp

MCP server Claude CodeCodexCursor +2

Reproducibility logging and rule enforcement MCP server for scientific computing. Runs locally from the repro-mcp Python package.

not rated 0 3mo ago A tokens not measured

uniprot-mcp

962

pansapiens/uniprot-unipressed-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol server that surfaces UniProtKB data as MCP resources, tools, and prompts. Runs locally from the uniprot-mcp Python package.

not rated 0 7mo ago A tokens not measured copy · 86% MIT

mygene-mcp

963

nickzren/mygene-mcp

MCP server Claude CodeCodexCursor +2

MCP server "mygene-mcp" as configured in nickzren/mygene-mcp. Runs locally from the mygene-mcp Python package.

not rated 0 4mo ago A tokens not measured original MIT

nasa-ads-mcp

964

mubashir1osmani/nasa-ads

MCP server Claude CodeCodexCursor +2

MCP server for NASA ADS (Astrophysics Data System) — search, citations, exports, visualizations. Runs locally from the nasa-ads-mcp Python package.

not rated 0 4mo ago A tokens not measured

acatome-quest-mcp

965

retospect/acatome-quest-mcp

MCP server Claude CodeCodexCursor +2

Paper-request MCP: track, resolve, fetch (OA-only), and flag misconceptions for scientific papers. Runs locally from the acatome-quest-mcp Python package.

not rated 0 2mo ago A tokens not measured

prdai/mcp-carbon-calculator

MCP server Claude CodeCodexCursor +2

One of 2 in claude_desktop_config.json

MCP server "carbon-calculator-production", hosted remotely at mcp-carbon-calculator.mcp-carbon-calculator.workers.dev, as configured in prdai/mcp-carbon-calculator. Needs 2 environment variables to run.

not rated 0 11mo ago A tokens not measured archived

symath-mcp

967

3aKHP/math-mcp

MCP server Claude CodeCodexCursor +2

Math MCP Server — symbolic computation, calculus, linear algebra, number theory, statistics, and unit conversion via MCP. Runs locally from the symath-mcp Python package.

not rated 0 3mo ago A tokens not measured original MIT

vtkapi-mcp

968

patrickoleary/vtkapi-mcp

MCP server Claude CodeCodexCursor +2

VTK API validation utilities and MCP server tooling. Runs locally from the vtkapi-mcp Python package.

not rated 0 8mo ago A tokens not measured original MIT

mcp-multi-weather

969

igalarzab/mcp-multi-weather

MCP server Claude CodeCodexCursor +2

MCP server for checking the weather history and forecast. Runs locally from the mcp-multi-weather Python package.

not rated 0 1y ago A tokens not measured

phasefolio

970

TamalAdebisi/phasefolio-mcp

MCP server Claude CodeCodexCursor +2

PhaseFolio MCP client — biotech rNPV / probability-of-success engine for AI agents. One-line install for Claude, Codex, Cursor, and any MCP-compatible client. Runs locally from the @phasefolio/mcp npm package. Needs 1 environment variable to run.

not rated 0 3mo ago A tokens not measured original MIT

recon-mcp

971

rafiulislam4246/recon-by-rafiul

MCP server Claude CodeCodexCursor +2

MCP server for NOAA hurricane reconnaissance data (HDOB, VDM, ATCF fixes). Runs locally from the recon-mcp Python package.

not rated 0 1mo ago A tokens not measured

nutrition-mcp-server

972

AiAgentKarl/nutrition-mcp-server

MCP server Claude CodeCodexCursor +2

MCP Server for nutrition data — USDA FoodData Central with 1M+ foods, nutrients, vitamins and dietary analysis. Runs locally from the nutrition-mcp-server Python package.

not rated 0 4mo ago A tokens not measured

mcp

973

carbonstop-hub/carbonstop-mcp

MCP server Claude CodeCodexCursor +2

MCP server for Carbonstop — carbon footprint modeling via Carbonstop Gateway API. Runs locally from the @carbonstopper/mcp npm package.

not rated 0 3mo ago A tokens not measured

matlab-mcp-server

974

flyearth9981/matlab-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server for MATLAB integration. Runs locally from the matlab-mcp-server Python package.

not rated 0 10mo ago A tokens not measured original MIT

ryogena-pubmed-mcp

975

KyleVick4/pubmed-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol server for PubMed — search, fetch, related-articles, and author lookup against NCBI E-utilities. No API key required. Runs locally from the ryogena-pubmed-mcp Python package.

not rated 0 4mo ago A tokens not measured original MIT

fdmnes-mcp

976

Joint-Photon-Sciences-Institute/fdmnes-mcp

MCP server Claude CodeCodexCursor +2

MCP server wrapping FDMNES (X-ray spectroscopy ab-initio code) for natural-language driven workflows in Claude Code, Claude Desktop, and other MCP clients. Runs locally from the fdmnes-mcp Python package.

not rated 0 3mo ago A tokens not measured original BSD-3-Clause

mcp-alphafold

977

zeinab-sheikhi/mcp-alphafold

MCP server Claude CodeCodexCursor +2

MCP server "mcp-alphafold" as configured in zeinab-sheikhi/mcp-alphafold. Runs locally from the mcp-alphafold Python package.

not rated 0 1y ago A tokens not measured

hpc-mcp

978

PetitSphincter/hpc-support-mcp

MCP server Claude CodeCodexCursor +2

Agentic MCP tools for HPC. Runs locally from the hpc-mcp Python package.

not rated 0 1mo ago A tokens not measured original Apache-2.0

ciqual-mcp

979

fastmcp-me/ciqual-mcp

MCP server Claude CodeCodexCursor +2

MCP server for ANSES Ciqual French food composition database with SQL interface. Runs locally from the ciqual-mcp Python package.

not rated 0 7mo ago A tokens not measured copy · 100% MIT

mcp-ubergraph-query

980

twhetzel/mcp-ubergraph-query

MCP server Claude CodeCodexCursor +2

MCP server for querying the Ubergraph biomedical ontology SPARQL endpoint. Runs locally from the mcp-ubergraph-query Python package.

not rated 0 6mo ago A tokens not measured original MIT

DeepMapAI/deepmap-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "geophysical-intelligence" as configured in DeepMapAI/deepmap-mcp-server. Runs locally from the deepmap-mcp Python package. Needs 2 environment variables to run.

not rated 0 5mo ago A tokens not measured original MIT

landuse-mcp

982

contextualizer-ai/landuse-mcp

MCP server Claude CodeCodexCursor +2

An MCP for retrieving land use data for a given location. Runs locally from the landuse-mcp Python package.

not rated 0 1y ago A tokens not measured original MIT

townshipamerica-mcp

983

townshipamerica/python-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol server for Township America — PLSS and Texas TXSS tools for AI agents. Runs locally from the townshipamerica-mcp Python package.

not rated 0 2mo ago A tokens not measured original MIT