A set of skills for SDRF annotation, where SDRF is a standard way to describe samples and experiment details in proteomics research. Proteomics is the study of the proteins found in biological samples.

Use it to prepare or review SDRF sample annotations and other proteomics metadata workflows.

It helps organize the metadata needed to describe proteomics experiments consistently for analysis and sharing.

sdrf-skills — Plugin for Claude Code by bigbio

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo

git clone --depth 1 https://github.com/bigbio/sdrf-skills

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

README.md

[![agentmods](https://agentmods.dev/badge/plugins/bigbio/sdrf-skills/sdrf-skills.svg)](https://agentmods.dev/plugins/bigbio/sdrf-skills/sdrf-skills)

Your own site

<a href="https://agentmods.dev/plugins/bigbio/sdrf-skills/sdrf-skills"><img src="https://agentmods.dev/badge/plugins/bigbio/sdrf-skills/sdrf-skills.svg" alt="Measured on agentmods" height="20"></a>

Per session not measured What this adds to a session before it is invoked.

When invoked not measured The manifest loads nothing itself; its 16 skills, 2 hooks, 1 MCP server cost 906 tokens a session between them.

Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.

Origin original No closer match found in the catalogue.

Security

Grade A, and why

sdrf-skills scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 8d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude-plugin/plugin.json · 11 lines

What it actually says

{
  "name": "sdrf-skills",
  "version": "0.2.0",
  "description": "SDRF annotation skills — expert-level proteomics metadata workflows for AI assistants",
  "author": {
    "name": "Yasset Perez-Riverol"
  },
  "license": "MIT",
  "hooks": "./hooks/hooks.json"
}

Contents

What it installs

The manifest is a name and a version. 16 skills, 2 hooks, 1 MCP server travel with it, and installing the plugin installs all of them — 906 tokens a session between them. Each is measured on its own page, and each can be installed alone.

Files

What ships with it

1 file beside plugin.json in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

marketplace.json 679 B

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

8d ago First seen · 11 lines scan A 12fa1a1b38aa

Subscribe to this mod's changes

sdrf-skills is a plugin published in the GitHub repository bigbio/sdrf-skills (18 stars, last pushed yesterday), licensed MIT. Its token cost is not measured: this kind of file is read by the harness, not the model. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Scientific metadata metadata-extraction proteomics proteomics-sample-metadata sdrf

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