proteomics

proteomics is a plugin for Claude Code from MannLabs/proteomics-agent-skills. Its manifest loads nothing; the 11 skills it bundles cost 689 tokens per session together, scanned A, original, Apache-2.0.

A plugin for analysing proteomics data, which measures proteins in biological samples. It covers data quality checks, normalization, missing-value handling, batch correction, differential-expression analysis and biological interpretation.

In plain words
What is it for?
Use it to clean and compare proteomics results, identify proteins that differ between groups, correct technical variation and interpret biological meaning.
Why use it?
It provides a defined analysis process for turning raw search-engine output tables into interpretable biological results.

Plugin for Claude Code

Written for Claude Code: a Claude Code plugin manifest.

Good fit Use it to clean and compare proteomics results, identify proteins that differ between groups, correct technical variation and interpret biological meaning.

Compare 6 plugins from other repositories ↓
Install in Claude Code
/plugin marketplace add MannLabs/proteomics-agent-skills
/plugin install proteomics
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo
git clone --depth 1 https://github.com/MannLabs/proteomics-agent-skills

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for proteomics

README.md
[![agentmods](https://agentmods.dev/badge/plugins/mannlabs/proteomics-agent-skills/proteomics/github.svg)](https://agentmods.dev/plugins/mannlabs/proteomics-agent-skills/proteomics)
Your own site
<a href="https://agentmods.dev/plugins/mannlabs/proteomics-agent-skills/proteomics"><img src="https://agentmods.dev/badge/plugins/mannlabs/proteomics-agent-skills/proteomics/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for proteomics

Your own site · 80×15
<a href="https://agentmods.dev/plugins/mannlabs/proteomics-agent-skills/proteomics"><img src="https://agentmods.dev/badge/plugins/mannlabs/proteomics-agent-skills/proteomics.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session not measured What this adds to a session before it is invoked.
When invoked not measured The manifest loads nothing itself; its 11 skills cost 689 tokens a session between them.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Security

Grade A, and why

proteomics scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

plugins/proteomics/.claude-plugin/plugin.json · 15 lines

What it actually says

{
  "$schema": "https://json.schemastore.org/claude-code-plugin-manifest.json",
  "name": "proteomics",
  "version": "0.1.0",
  "description": "Transform proteomics search-engine output tables into high-confidence biological insights using best practices: data reading, quality control, normalization, imputation, batch-effect correction, differential expression analysis, and biological interpretation.",
  "author": {
    "name": "MannLabs",
    "url": "https://github.com/MannLabs"
  },
  "homepage": "https://github.com/MannLabs/proteomics-agent-skills",
  "repository": "https://github.com/MannLabs/proteomics-agent-skills",
  "license": "Apache-2.0",
  "keywords": ["proteomics", "mass-spectrometry", "bioinformatics", "omics", "skills"]
}
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 15 lines scan A 2eb91aa3b4f8

Subscribe to this mod's changes

proteomics is a plugin published in the GitHub repository MannLabs/proteomics-agent-skills (16 stars, last pushed 4d ago), licensed Apache-2.0. Its token cost is not measured: this kind of file is read by the harness, not the model. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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