bioinformatics plugins

Kayunangka/claude-skill

Plugin Claude Code

Guide for writing ast-grep rules to perform structural code search and analysis. Use when users need to search codebases using Abstract Syntax Tree (AST) patterns, find specific code structures, or perform complex code queries that go beyond simple text search.

HERRY423/CellTypePilot

Plugin Claude Code

Single-cell annotation review plugin — governed context, independent state evidence, conservative abstention, and critic checks.

BioSymphony/cryocore

Plugin Claude Code

Plugin marketplace listing 1 plugin: cryocore.

BioSymphony/cryocore

Plugin Claude Code

BioSymphony CryoCore skills for public-safe cryo-EM workflow planning, validation, and closeout.

BioSymphony/structure-factory

Plugin Claude Code

Plugin marketplace listing 1 plugin: biosymphony-structure-factory.

BioSymphony/structure-factory

Plugin Claude Code

BioSymphony Structure Factory skills for public-safe structural biology campaign planning.

cyanheads/protein-mcp-server

Plugin Claude Code

Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models.

Pavel-Kravchenko/Bioinformatics

Plugin Claude Code

213 bioinformatics skills for Claude Code — sequence analysis, NGS pipelines, single-cell, metagenomics, structural biology, cheminformatics, algorithms, and AI for science.

cyanheads/brapi-mcp-server

Plugin Claude Code

A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. Search studies, germplasm, genotypes, & more - across Breedbase, T3, Sweetpotatobase, & any BrAPI v2-compliant server.

Hongda-Zhao/bio-gene-to-reference-tree

Plugin Claude Code

Auditable bioinformatics Agent Skills maintained by Hongda Zhao.

cyanheads/ensembl-mcp-server

Plugin Claude Code

Look up genes, fetch sequences, predict variant consequences, find orthologs, and retrieve cross-database xrefs from Ensembl REST via MCP. STDIO or Streamable HTTP.

genecell/preprint-fulltext

Plugin Claude Code

Plugin marketplace listing 1 plugin: preprint-fulltext.

genecell/preprint-fulltext

Plugin Claude Code

Retrieve full text of bioRxiv/medRxiv/arXiv preprints as structured sections to ground scientific reasoning and deep research, search/discover preprints, and build embedding-ready corpora (Europe PMC + openRxiv S3 + arXiv LaTeXML), via CLI and MCP.

cyanheads/gnomad-genetics-mcp-server

Plugin Claude Code

Look up variant allele frequencies by ancestry, gene loss-of-function constraint, gene variant lists, and sequencing coverage over gnomAD — with ClinVar significance joined in.

cyanheads/uniprot-mcp-server

Plugin Claude Code

Protein research over UniProtKB — search by function, fetch curated records, map IDs, proteomes.