logseq-directory-structure

A set of rules for organizing files in a Logseq graph, which is a folder of Markdown notes managed by Logseq.

In plain words
What is it for?
Use it when creating or editing Logseq pages, daily journals, namespaces, images, PDFs, and other graph files.
Why use it?
It prevents duplicate page names, misplaced notes, and broken links to attachments or configuration files.

Cursor rule

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add rules/codekiln/logseq-cursor-rules/logseq-directory-structure
Clone the repo
git clone --depth 1 https://github.com/codekiln/logseq-cursor-rules
Per session 10 Only the description is in the session, so the agent can decide to use it. The body loads when it is invoked.
When invoked 344 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00010 $0.00344
Opus 5 $0.00005 $0.00172
Sonnet 5 $0.00002 $0.00069
Haiku 4.5 $0.00001 $0.00034

Measured yesterday against content hash 77f24043873f, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

logseq-directory-structure scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

logseq-directory-structure.mdc · 15 lines

What it actually says

Logseq Directory Structure

  • logseq-graph - the root of the logseq graph. In some projects, this is the root of the git repo. In others, the logseq root is a folder inside of the git root directory. The name of this is unique to the graph.
  • logseq-graph/pages/*.md - All the pages in the graph that are not journal pages are stored here.
    • Logseq will not create markdown files in subfolders of pages/*/*.md, but if a markdown file is placed in a subfolder of pages, logseq will be able to read and edit it. Logseq has a requirement that each page have a unique file name across the whole graph. If pages/cars.md exists, if a cars.md file is placed anywhere else in the repository, Logseq will display an error.
    • logseq supports special hierarchies called "namespaces". A page with the title or "namespace" [[Project/Tasks]] is stored as Project___Tasks.md in pages/. Triple underscores delimit the hierarchical components.
  • logseq-graph/journals/YYYY_MM_DD.md - Contains daily journal entries
  • logseq-graph/assets/ - Stores images, pdfs and other attachments that are referenced in markdown files via relative links.
  • logseq-graph/logseq/ - Configuration directory for the logseq graph. You typically shouldn't edit this.
  • .gitignore - Standard Git ignore file (if using Git)
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. yesterday First seen · 15 lines · 10 tokens per session scan A 77f24043873f

Subscribe to this mod's changes

logseq-directory-structure is a cursor rule published in the GitHub repository codekiln/logseq-cursor-rules (2 stars, last pushed 10mo ago), licensed MIT. It adds 10 tokens to every session and 344 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.