Skill Claude CodeCodex
Annotate variants with deterministic tools such as VEP and preserve exact tool versions and command provenance. Use after normalization and before prioritization.
not rated 4 2mo ago A 32 tokens
original MIT
4Stars on the repository
22Mods indexed here, across every type
2mo agoLast push, which is what freshness is scored on
MITLicence, which decides whether bodies are shown
Skill Claude CodeCodex
Detect the reference build and create a normalized derived copy without touching the raw input. Use before annotation or cross-tool comparison.
not rated 4 2mo ago A 29 tokens
original MIT
Skill Claude CodeCodex
Assemble structured findings and evidence into a human-readable report plus machine-readable index. Use after prioritization is finished.
not rated 4 2mo ago A 26 tokens
original MIT
ingest-vcf
04Skill Claude CodeCodex
Validate and inventory VCF or BCF input files before downstream analysis. Use when a user provides a genome variant file or asks what data is inside it.
not rated 4 2mo ago A 36 tokens
original MIT
Skill Claude CodeCodex
Run or prepare reproducible Nextflow workflows for heavy genomics jobs. Use only for explicit workflow execution, not routine question answering.
not rated 4 2mo ago A 31 tokens
original MIT
Skill Claude CodeCodex
Generate a clearly separated pharmacogenomics section with conservative language and explicit human-review flags. Use only when the user requests drug-response analysis.
not rated 4 2mo ago B 32 tokens
original MIT
Skill Claude CodeCodex
Run optional polygenic or trait-style scoring workflows and label all outputs as probabilistic. Use only when requested and keep results separate from direct variant findings.
not rated 4 2mo ago A 34 tokens
original MIT
Skill Claude CodeCodex
Convert raw annotations into ranked, evidence-linked findings. Use after annotation when building a structured report.
not rated 4 2mo ago A 24 tokens
original MIT
Skill Claude CodeCodex
Answer targeted questions about genes, rsIDs, coordinates, or variant panels from local genome files. Use for focused exploration before full reporting.
not rated 4 2mo ago A 31 tokens
original MIT
Skill Claude CodeCodex
Prepare or validate a local genome-analysis workstation. Use before the first run on a machine or when toolchain drift is suspected.
not rated 4 2mo ago A 29 tokens
original MIT
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