adaptyv

adaptyv is a skill for Claude Code, Codex from agentlas-ai/agentlas-desktop. It costs 113 tokens per session (2,705 once invoked), scanned A, a copy of adaptyv, Apache-2.0.

An integration guide for the Adaptyv Bio Foundry API and Python SDK, a cloud laboratory service for running experiments on protein sequences. It covers submitting sequences and retrieving results from binding, stability, expression, and related assays.

In plain words
What is it for?
Use it to submit protein experiments, query targets and results, and build software around automated protein screening.
Why use it?
It explains how to connect software to the lab service and keep access tokens out of source code.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to submit protein experiments, query targets and results, and build software around automated protein screening.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/agentlas-ai/agentlas-desktop/adaptyv
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add agentlas-ai/agentlas-desktop --skill adaptyv
Clone the repo
git clone --depth 1 https://github.com/agentlas-ai/agentlas-desktop

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for adaptyv

README.md
[![agentmods](https://agentmods.dev/badge/skills/agentlas-ai/agentlas-desktop/adaptyv/github.svg)](https://agentmods.dev/skills/agentlas-ai/agentlas-desktop/adaptyv)
Your own site
<a href="https://agentmods.dev/skills/agentlas-ai/agentlas-desktop/adaptyv"><img src="https://agentmods.dev/badge/skills/agentlas-ai/agentlas-desktop/adaptyv/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for adaptyv

Your own site · 80×15
<a href="https://agentmods.dev/skills/agentlas-ai/agentlas-desktop/adaptyv"><img src="https://agentmods.dev/badge/skills/agentlas-ai/agentlas-desktop/adaptyv.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 113 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,705 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin 86% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00113 $0.02705
Opus 5.5 $0.00045 $0.01082
Sonnet 5.5 $0.00023 $0.00541
Haiku 4.5 $0.00011 $0.00270

Measured 1mo ago against content hash 2df5e16209d5, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

adaptyv scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

The [official API docs](https://docs.adaptyvbio.com/api-reference/api-introduction) use `FOUNDRY_API_TOKEN` in curl examples; that is the same bearer token — prefer `ADAPTYV_API_KEY` in Python and new shell scripts for c
Origin

This is a copy

86% identical to adaptyv — 360 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

plugins/agentlas-science-skills/skills/adaptyv/SKILL.md · 258 lines

How it starts

The opening of the file, as written. The whole thing — 258 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Adaptyv Bio Foundry API

Adaptyv Bio is a cloud lab that turns protein sequences into experimental data. Users submit amino acid sequences via API or UI; Adaptyv's automated lab runs assays (binding, thermostability, expression, fluorescence) and delivers results in ~21 days.

Official docs: docs.adaptyvbio.com/api-reference · llms.txt index · OpenAPI spec

Quick Start

Base URL: https://foundry-api-public.adaptyvbio.com/api/v1

Authentication: Bearer token in the Authorization header. Tokens are obtained from foundry.adaptyvbio.com sidebar.

When writing code, always read the API key from the environment variable ADAPTYV_API_KEY or from a .env file — never hardcode tokens. Check for a .env file in the project root first; if one exists, use a library like python-dotenv to load it.

The official API docs use FOUNDRY_API_TOKEN in curl examples; that is the same bearer token — prefer ADAPTYV_API_KEY in Python and new shell scripts for consistency with the SDK.

export ADAPTYV_API_KEY="abs0_..."
curl https://foundry-api-public.adaptyvbio.com/api/v1/targets?limit=3 \
  -H "Authorization: Bearer $ADAPTYV_API_KEY"

Every request except GET /openapi.json requires authentication. Store tokens in environment variables or .env files — never commit them to source control.

Python SDK

Version note: adaptyv-sdk 0.1.0 (beta) is not yet on PyPI — install from GitHub:

uv pip install "git+https://github.com/adaptyvbio/adaptyv-sdk.git"

In a project with pyproject.toml:

uv add "adaptyv-sdk @ git+https://github.com/adaptyvbio/adaptyv-sdk.git"

Environment variables (set in shell or .env file):

ADAPTYV_API_KEY=your_api_key
ADAPTYV_API_URL=https://foundry-api-public.adaptyvbio.com/api/v1
ADAPTYV_ORGANIZATION_ID=your_org_id  # optional

Read the full file on GitHub · 258 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 258 lines · 113 tokens per session scan A 2df5e16209d5

Subscribe to this mod's changes

adaptyv is a skill published in the GitHub repository agentlas-ai/agentlas-desktop (6 stars, last pushed yesterday), licensed Apache-2.0. It adds 113 tokens to every session and 2,705 once invoked, about $0.0005 per session on Opus 5.5. A static security scan graded it A with 1 finding (makes network calls). It is 86% identical to adaptyv, differing in 360 lines, and is treated as a copy.

Related

Other skills, from other repositories

exporting-bulk-fhir

Kick off and harvest a FHIR Bulk Data $export (system-, group-, or patient-level) and stream the resulting NDJSON into a batch OpenMed de-identification + NER pipeline at cohort scale. Covers the async kickoff (Prefer respond-async) -> poll Content-Location -> download NDJSON flow, the Bulk Data Access IG, type/since…

maziyarpanahi/openmed · 151 tokens

fetching-fhir-resources

Fetches and pages FHIR R4 resources (Patient, DocumentReference, DiagnosticReport, Observation, Condition) from a FHIR REST server, decodes base64 attachments, and extracts clinical narrative for OpenMed. Use before OpenMed processing when pulling charts from an EHR FHIR API (Epic, Cerner/Oracle, HAPI, or any US Core…

maziyarpanahi/openmed · 166 tokens

devtu-create-tool

Create new scientific tools for ToolUniverse framework with proper structure, validation, and testing. Use when users need to add tools to ToolUniverse, implement new API integrations, create tool wrappers for scientific databases/services, expand ToolUniverse capabilities, or follow ToolUniverse contribution…

mims-harvard/ToolUniverse · 75 tokens

claude-api

Build, debug, and optimize Claude API / Anthropic SDK apps. Apps built with this skill should include prompt caching. Also handles migrating existing Claude API code between Claude model versions (4.5 → 4.6, 4.6 → 4.7, retired-model replacements). TRIGGER when: code imports anthropic/@anthropic-ai/sdk; user asks for…

warpdotdev/warp · 193 tokens

vellum-oauth-integrations

Act on behalf of your user in any third-party software that supports OAuth 2.0.

vellum-ai/vellum-assistant · 25 tokens

protocolsio-integration

Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io…

synthetic-sciences/openscience · 85 tokens