ai-gene-review: Skill for Claude Code

.claude/skills/boss/SKILL.md

boss is a skill for Claude Code from ai4curation/ai-gene-review. It costs 95 tokens per session (4,230 once invoked), scanned A, original, BSD-3-Clause.

An orchestration skill for coordinating coding agents in separate tmux sessions, which are terminal workspaces that can keep processes running.

In plain words
What is it for?
It is for starting or checking parallel Codex or Claude Code work on gene-review tasks, including status checks.
Why use it?
It helps manage multiple agent jobs and makes their progress, branches, worktrees, and review status visible.

Skill for Claude Code

Written for Claude Code: argument-hint in frontmatter. Also seen: mentions CLAUDE.md; mentions subagents; names the TodoWrite tool.

This is ai4curation/ai-gene-review's own configuration. It tells Claude Code how to work on ai-gene-review itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything ai-gene-review configures →

Not installable: its command points at a path on the author’s own machine, so it runs nowhere else. The line is /Users/cjm/worktrees/ai-gene-review-review-sdha.

Reuse

Borrowing it

Nothing to install: this file belongs to ai4curation/ai-gene-review. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/ai4curation/ai-gene-review/main/.claude/skills/boss/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/ai4curation/ai-gene-review

Made for: Claude Code.

Wrote this? Show the measurements

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README.md
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Per session 95 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 4,230 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00095 $0.04230
Opus 5 $0.00048 $0.02115
Sonnet 5 $0.00019 $0.00846
Haiku 4.5 $0.00010 $0.00423

Measured 11d ago against content hash bd86804f6365, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

boss scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/skills/boss/SKILL.md · 280 lines

How it starts

The opening of the file, as written. The whole thing — 280 lines — stays where its author put it; the contents beside it link to each section on GitHub.

boss: orchestrate multiple agents in the ai-gene-review repo

Overview

Use this skill when the user wants you to orchestrate one or more gene review jobs, in such a way the user has observability via the tmux wrapper tp

Ground rules:

  • bosses are knowledgeable about GO annotation review but delegate all work involving editing
  • bosses will answer questions in response to a user, and may do extensive research, but if it turns into something bigger, should be delegated to an agent

Example user invocations:

  • /boss review human SDHA
    • user intent: create a new tp session to review a gene's annotations
  • /boss review ECOLI secA BACSU ftsZ DROME jar
    • user intent: batch-review multiple genes in parallel
  • /boss status
    • user intent: I want to know the status of all sessions in this repo
      • are they active?
      • is there a PR?
      • is the PR passing?
      • has the PR been reviewed? If so, was it approved?
      • is the PR in conflict?

About

Turn the main session into an orchestrator of external agents running in tmux. Each worker is a Codex or Claude Code process inside its own tmux session, on its own branch, in its own git worktree. Boss observes and steers via tp (tmux-pilot) — never via raw tmux send-keys. Boss does not write code itself.

Core principle: one worker = one task = one branch = one worktree.

Typical ai-gene-review tasks

  • Gene review: review GO annotations for a gene (the primary task). One gene = one PR.
  • Rule review: review UniProt annotation rules (ARBA/UniRule). One rule = one PR.
  • Prediction review: review computational predictions for a gene. Can be bundled with gene review.

When NOT to use

  • The user did not explicitly invoke boss / tp / tmux-pilot / "external agents". A bare "do these in parallel" is not a boss invocation — use superpowers:dispatching-parallel-agents (in-process subagents) instead.
  • Single-task or strictly sequential work — just do it directly.
  • Tasks have cross-dependencies. Boss assumes embarrassingly parallel work (in this repo: one PR per gene). Serialize dependent work yourself.

Read the full file on GitHub · 280 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 11d ago First seen · 280 lines · 95 tokens per session scan A bd86804f6365

Subscribe to this mod's changes

boss is a skill published in the GitHub repository ai4curation/ai-gene-review (24 stars, last pushed today), licensed BSD-3-Clause. It adds 95 tokens to every session and 4,230 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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