44 tagged monarchinitiative, measured the same way as everything else here.
Browse within: obofoundry 28ai4curation 23disease-mechanisms 21kozahub-ingest 21linkml 21functional-annotation 15geneontology 15
Skill Claude CodeCodex
Skill for populating the classifications top-level block of a dismech Disease entry. Covers Harrison's Part assignment, mechanistic nosology, lysosomal storage, IUIS immunodeficiency, channelopathy, and ICD-O morphology fields, with a lookup table from common clinical phrasing to controlled-vocabulary keys.
Skill Claude CodeCodex
Instructions for reviewing a dismech PR, in particular PRs relating to disorder curation, either creating new dismech entries or updating existing ones.
Skill Claude CodeCodex
Skill for initiating new disorder YAML files in the dismech knowledge base. Use this skill when the user asks to create a new disorder entry. Also useful for enhancing existing entries.
Skill Claude CodeCodex
Work with BioReason-Pro predictions and reasoning traces for protein function. Use when: comparing BioReason outputs against curated reviews, converting web exports to YAML, reviewing reasoning trace quality, or running the SFT/RL comparison. Triggers: "bioreason", "GO-GPT predictions", "reasoning trace review"…
Skill Claude CodeCodex
Use ONLY when the user explicitly asks to orchestrate parallel external agents (Codex or Claude Code) in tmux sessions via tp (tmux-pilot). Or when a user tells you that you're the boss or orchestrator. You can also use this if you are an operclaw agent. NEVER auto-invoke for a generic "do this in parallel" request.…
Skill Claude CodeCodex
Use this agent when you need to review UniProt annotation rules (ARBA, UniRule) for quality, biological accuracy, and GO annotation appropriateness. This agent performs comprehensive analysis of rule condition sets, evaluates literature support, assesses taxonomic scope, and recommends curation actions.
Skill Claude CodeCodex
Skill to assist with how a GitHub repository is configured with GitHub integrations, including instructions for agents in markdown (AGENTS and CLAUDE), github actions for invoking agents, and specific localization procedures such as defining claude/codex skills, or claude subagents. The skill helps with both technical…
Skill Claude CodeCodex
Skills for understanding and applying DOSDP (Dead Simple Ontology Design Patterns) to ensure consistent ontology term creation and maintenance. This skill is about recognizing patterns and ensuring consistency, not using dosdp-tools directly.
Skill Claude CodeCodex
Skills for using ROBOT, the OBO ontology command-line toolkit for reasoning, template-based term creation, quality control, format conversion, and ontology manipulation. Use this when working with OWL/OBO ontologies that need automated processing.
Skill Claude CodeCodex
Guide for creating new GitHub repos and best practice for existing GitHub repos, applicable to both code and non-code projects.
Skill Claude CodeCodex
Query the AOP-Wiki XML export — Adverse Outcome Pathways, Key Events, and Key Event Relationships — through the installable aop-wiki-cli module. Use when asked to find the AOP/KE/KER for a mechanism, stressor, or adverse outcome; to run or write an AOP-Wiki term search config; to pull KER weight-of-evidence, empirical…
Skill Claude CodeCodex
Assess how much evidence AOP-Wiki actually carries for a Key Event Relationship before curating from it. Use when judging whether a KER, or a set of them, is backed by literature; when reading completionscore, weightofevidence, empiricalsupport, or oecdstatus off a KER or its parent AOP; when deciding how much…
Skill Claude CodeCodex
Turn a set of AOP-Wiki Key Events into a verified set of dismech causal edges. Use when an issue, pilot mapping, or project page names Key Events (especially Molecular Initiating Events) with no dismech counterpart and you need to find what each one leads to, judge whether the AOP-Wiki record supports the claim, and…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: