academic-aio

academic-aio is a skill for Claude Code from Aperivue/medsci-skills. It costs 173 tokens per session (7,729 once invoked), scanned A, original, MIT.

A guide for making medical-AI papers, preprints, summaries, and code releases easier for academic search engines and literature tools to find and understand.

In plain words
What is it for?
Reviewing titles, abstracts, plain-language summaries, structured research boxes, manuscripts, and project descriptions for search visibility.
Why use it?
It identifies missing or unclear information that can reduce accurate discovery and citation, while requiring suggested changes to be shown explicitly.

Skill for Claude Code

Written for Claude Code: ${CLAUDE_SKILL_DIR} variable. Also seen: model in frontmatter; reads .claude/ paths.

Part of the medsci-writing plugin — 7 skills shipped together

Good fit Reviewing titles, abstracts, plain-language summaries, structured research boxes, manuscripts, and project descriptions for search visibility.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/aperivue/medsci-skills/academic-aio
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Aperivue/medsci-skills --skill academic-aio
Clone the repo
git clone --depth 1 https://github.com/Aperivue/medsci-skills

Made for: Claude Code.

Or install medsci-writing, the plugin that ships this one along with the rest of its 7 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for academic-aio

README.md
[![agentmods](https://agentmods.dev/badge/skills/aperivue/medsci-skills/academic-aio/github.svg)](https://agentmods.dev/skills/aperivue/medsci-skills/academic-aio)
Your own site
<a href="https://agentmods.dev/skills/aperivue/medsci-skills/academic-aio"><img src="https://agentmods.dev/badge/skills/aperivue/medsci-skills/academic-aio/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for academic-aio

Your own site · 80×15
<a href="https://agentmods.dev/skills/aperivue/medsci-skills/academic-aio"><img src="https://agentmods.dev/badge/skills/aperivue/medsci-skills/academic-aio.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 173 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 7,729 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector warn 7 Sept 2026
SkillSpector: 1 finding, up to medium

These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →

  • medium Rogue Agent · line 312
    Skill establishes unauthorized persistence across sessions via cron jobs, startup scripts, or state files. Session persistence allows an attacker to maintain access beyond the current interaction.
    Fix: Remove any persistence mechanisms (cron jobs, startup scripts, state files). Skills should not maintain state across sessions without explicit user consent.
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00173 $0.07729
Opus 5 $0.00086 $0.03864
Sonnet 5 $0.00035 $0.01546
Haiku 4.5 $0.00017 $0.00773

Measured 11d ago against content hash 9e43ec3cc38a, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

academic-aio scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.

The scan reads SKILL.md. This mod also ships 6 executable files (scripts/batch_metadata_audit.py, scripts/check_summary_box.py, scripts/validate_schema.py, …), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/academic-aio/SKILL.md · 422 lines

How it starts

The opening of the file, as written. The whole thing — 422 lines — stays where its author put it; the contents beside it link to each section on GitHub.

You are helping a medical-AI researcher optimize a paper, preprint, README, or code release so that it is surfaced and cited accurately by AI search engines (Perplexity, ChatGPT web, Elicit, Consensus, SciSpace), RAG-based literature tools, and traditional scholarly indexes (Semantic Scholar, Google Scholar, PubMed). Your output is a visible pass/fail checklist with concrete edit suggestions, not silent rewrites.

Communication Rules

  • Surface the checklist in the response. Never apply AIO edits silently.
  • Report PASS / PARTIAL / FAIL per item with a one-line reason and concrete fix.
  • When a rule conflicts with journal formatting, defer to the journal and mark the item NA with explanation.
  • Cite external guidance (TRIPOD+AI, CLAIM, STARD-AI, Agarwal 2025, Algaba 2024, Aggarwal 2024 GEO) with DOI or arXiv ID when introducing a rule.
  • Do not hallucinate citations. If unsure, mark as [VERIFY].

When to Invoke

Run this skill when the user is working on any of:

  • Drafting or revising a title, abstract, structured-summary box, or plain-language summary.
  • Writing or reviewing a manuscript for a medical-AI venue (Lancet DH, Radiology, RYAI, npj DM, Nat Med, JAMIA, JMIR, JDI).
  • Preparing a preprint (medRxiv, arXiv, bioRxiv, Research Square).
  • Composing a GitHub README, CITATION.cff, Zenodo archive metadata, Hugging Face model card, or dataset card.
  • Planning a post-acceptance launch (SNS seeding, author landing page, visual abstract).
  • Responding to a reviewer query about discoverability, reproducibility, or AI-search citation.

Pairs with (do not duplicate):

  • write-paper — Phase 6 (draft) and Phase 7 (QC). AIO rules extend the title/abstract/discussion sections.
  • check-reporting — reporting-guideline item audit (TRIPOD+AI, CLAIM, etc.). AIO requires guideline adherence but does not reproduce the audit.
  • self-review — adversarial review. Run AIO after self-review so QC-confirmed claims anchor the checklist.
  • humanize — AI-pattern removal. Run humanize before AIO so the final text is both human-readable and AI-extractable.

Read the full file on GitHub · 422 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 11d ago First seen · 422 lines · 173 tokens per session scan A 9e43ec3cc38a

Subscribe to this mod's changes

academic-aio is a skill published in the GitHub repository Aperivue/medsci-skills (292 stars, last pushed 4d ago), licensed MIT. It adds 173 tokens to every session and 7,729 once invoked, about $0.0009 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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