ai-for-science-oligoformer

ai-for-science-oligoformer is a skill for Claude Code from ascend-ai-coding/awesome-ascend-skills. It costs 75 tokens per session (2,100 once invoked), scanned A, original, no licence file.

A migration workflow for moving an siRNA prediction model from PyTorch and Transformer-based software to Huawei Ascend NPU hardware. It covers environment setup, RNA-FM dependencies, code changes, inference checks, and an optional training process.

In plain words
What is it for?
Use it to adapt and test the OligoFormer model on Ascend NPUs, including its RNA-FM dependency and optional training workflow.
Why use it?
It brings the hardware migration steps into one process and helps check whether the adapted model produces valid inference results. siRNA is a short RNA sequence used to influence gene activity.

Skill for Claude Code

Written for Claude Code: shipped in a Claude Code plugin.

Part of the ascend-ai-for-science plugin — 14 skills shipped together , and of ai-for-science

Good fit Use it to adapt and test the OligoFormer model on Ascend NPUs, including its RNA-FM dependency and optional training workflow.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/ascend-ai-coding/awesome-ascend-skills/oligoformer
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add ascend-ai-coding/awesome-ascend-skills --skill oligoformer
Clone the repo
git clone --depth 1 https://github.com/ascend-ai-coding/awesome-ascend-skills

Made for: Claude Code.

Or install ascend-ai-for-science, the plugin that ships this one along with the rest of its 14 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for ai-for-science-oligoformer

README.md
[![agentmods](https://agentmods.dev/badge/skills/ascend-ai-coding/awesome-ascend-skills/oligoformer/github.svg)](https://agentmods.dev/skills/ascend-ai-coding/awesome-ascend-skills/oligoformer)
Your own site
<a href="https://agentmods.dev/skills/ascend-ai-coding/awesome-ascend-skills/oligoformer"><img src="https://agentmods.dev/badge/skills/ascend-ai-coding/awesome-ascend-skills/oligoformer/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for ai-for-science-oligoformer

Your own site · 80×15
<a href="https://agentmods.dev/skills/ascend-ai-coding/awesome-ascend-skills/oligoformer"><img src="https://agentmods.dev/badge/skills/ascend-ai-coding/awesome-ascend-skills/oligoformer.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 75 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,100 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00075 $0.02100
Opus 5 $0.00037 $0.01050
Sonnet 5 $0.00015 $0.00420
Haiku 4.5 $0.00007 $0.00210

Measured 7d ago against content hash 4b8244f13954, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

ai-for-science-oligoformer scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 7d ago.

The scan reads SKILL.md. This mod also ships 1 executable file (scripts/validate_oligoformer_env.py), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

wget 'https://cloud.tsinghua.edu.cn/f/46d71884ee8848b3a958/?dl=1' -O RNA-FM.tar.gz
skills/ai-for-science/models/oligoformer/SKILL.md · 208 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 7d ago First seen · 208 lines · 75 tokens per session scan A 4b8244f13954

Subscribe to this mod's changes

ai-for-science-oligoformer is a skill published in the GitHub repository ascend-ai-coding/awesome-ascend-skills (168 stars, last pushed yesterday), with no licence file. It adds 75 tokens to every session and 2,100 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 1 finding (makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-05.

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